Index Catalog // ScholarsArchive@OSU

Influence of a sudangrass green manure on microorganisms and early dying of potatoes in two soils

Creator:: Parks, Robin L.
Abstract:: Effect of a sudangrass green manure in two soil types on the activity, populations and community structure of soil microorganisms, populations of Verticillium dahliae in soil and on potato roots, and potato early dying, were evaluated in a field microplot experiment in the Columbia Basin. Potato cv. Russet Burbank was...
Resource Type:: Masters Thesis
Full Text:: Robin L. Parks A THESIS submitted to Oregon State University in partial fulfillment of the

Latent homology and convergent regulatory evolution underlies the repeated emergence of yeasts

Creator:: Nagy, László G., Ohm, Robin A., Kovács, Gábor M., Floudas, Dimitrios, Riley, Robert, Gácser, Attila, Sipiczki, Mátyás, Davis, John M., Doty, Sharon L., de Hoog, G Sybren, Lang, B. Franz, Spatafora, Joseph W., Martin, Francis M., Grigoriev, Igor V., and Hibbett, David S.
Abstract:: Convergent evolution is common throughout the tree of life, but the molecular mechanisms causing similar phenotypes to appear repeatedly are obscure. Yeasts have arisen in multiple fungal clades, but the genetic causes and consequences of their evolutionary origins are unknown. Here we show that the potential to develop yeast forms...
Resource Type:: Article

Castilleja and Pedicularis are confirmed as telial hosts for white pine blister rust in whitebark pine ecosystems of Oregon and Washington

Creator:: Mulvey, Robin L.
Abstract:: The primary objective of this research was to determine if native species within the genera Castilleja and Pedicularis are naturally infected by white pine blister rust (Cronartium ribicola) in whitebark pine ecosystems of the Oregon and Washington Cascade Range. Secondary objectives were to monitor the phenology of aecial and telial...
Resource Type:: Masters Thesis
Full Text:: by Robin L. Mulvey A THESIS submitted to Oregon State University in partial

Diverse Lifestyles and Strategies of Plant Pathogenesis Encoded in the Genomes of Eighteen Dothideomycetes Fungi

Creator:: Ohm, Robin A., Feau, Nicolas, Henrissat, Bernard, Schoch, Conrad L., Horwitz, Benjamin A., Barry, Kerrie W., Condon, Bradford J., Copeland, Alex C., Dhillon, Braham, Glaser, Fabian, Hesse, Cedar N., Kosti, Idit, LaButti, Kurt, Lindquist, Erika A., Lucas, Susan, Salamov, Asaf A., Bradshaw, Rosie E., Ciuffetti, Lynda, Hamelin, Richard C., Kema, Gert H. J., Lawrence, Christopher, Scott, James A., Spatafora, Joseph W., Turgeon, B. Gillian, de Wit, Pierre J. G. M., Zhong, Shaobin, Goodwin, Stephen B., and Grigoriev, Igor V.
Abstract:: Correction 5 Mar 2013: Ohm RA, Feau N, Henrissat B, Schoch CL, Horwitz BA, et al. (2013) Correction: Diverse Lifestyles and Strategies of Plant Pathogenesis Encoded in the Genomes of Eighteen Dothideomycetes Fungi. PLOS Pathogens 9(3): 10.1371/annotation/fcca88ac-d684-46e0-a483-62af67e777bd
Resource Type:: Article
Full Text:: Pathogenesis Encoded in the Genomes of Eighteen Dothideomycetes Fungi Robin A. Ohm1*, Nicolas Feau2, Bernard

Biomass dynamics of dead Douglas-fir and western hemlock boles in mid-elevation forests of the Cascade Range

Creator:: Graham, Robin Lee Lambert
Abstract:: The rate and manner of bioniass loss from decomposing Douglas-fir and western hemlock boles in mid-elevation forests of the central Cascade Range were measured. Bole bark and wood were considered separately. Loss of bole wood due to respiration was measured by change in bole wood density. Loss of bole wood...
Resource Type:: Dissertation

Comparative Genome Structure, Secondary Metabolite, and Effector Coding Capacity across Cochliobolus Pathogens

Creator:: Condon, Bradford J., Leng, Yueqiang, Wu, Dongliang, Bushley, Kathryn E., Ohm, Robin A., Otillar, Robert, Martin, Joel, Schackwitz, Wendy, Grimwood, Jane, MohdZainudin, NurAinIzzati, Xue, Chunsheng, Wang, Rui, Manning, Viola A., Dhillon, Braham, Tu, Zheng Jin, Steffenson, Brian J., Salamov, Asaf, Sun, Hui, Lowry, Steve, LaButti, Kurt, Han, James, Copeland, Alex, Lindquist, Erika, Barry, Kerrie, Schmutz, Jeremy, Baker, Scott E., Ciuffetti, Lynda M., Grigoriev, Igor V., Zhong, Shaobin, and Turgeon, B. Gillian
Abstract:: The genomes of five Cochliobolus heterostrophus strains, two Cochliobolus sativus strains, three additional Cochliobolus species (Cochliobolus victoriae, Cochliobolus carbonum, Cochliobolus miyabeanus), and closely related Setosphaeria turcica were sequenced at the Joint Genome Institute (JGI). The datasets were used to identify SNPs between strains and species, unique genomic regions, core secondary...
Resource Type:: Article
Full Text:: ., Dongliang Wu1., Kathryn E. Bushley3, Robin A. Ohm4, Robert Otillar4, Joel Martin4, Wendy Schackwitz4, Jane

The Paleozoic Origin of Enzymatic Lignin Decomposition Reconstructed from 31 Fungal Genomes

Creator:: Floudas, Dimitrios, Yadav, Jagjit S., Aerts, Andrea, Benoit, Isabelle, Boyd, Alex, Carlson, Alexis, Copeland, Alex, Coutinho, Pedro M., de Vries, Ronald P., Ferreira, Patricia, Findley, Keisha, Binder, Manfred, Foster, Brian, Gaskell, Jill, Glotzer, Dylan, Gorecki, Pawel, Heitman, Joseph, Hesse, Cedar, Hori, Chiaki, Igarashi, Kiyohiko, Jurgens, Joel A., Kallen, Nathan, Riley, Robert, Kersten, Phil, Kohler, Annegret, Kues, Ursula, Kumar, T. K. Arun, Kuo, Alan, LaButti, Kurt, Larrondo, Luis F., Lindquist, Erika, Ling, Albee, Lombard, Vincent, Barry, Kerrie, Lucas, Susan, Lundell, Taina, Martin, Rachael, McLaughlin, David J., Morgenstern, Ingo, Morin, Emanuelle, Murat, Claude, Nagy, Laszlo G., Nolan, Matt, Ohm, Robin A., Blanchette, Robert A., Patyshakuliyeva, Aleksandrina, Rokas, Antonis, Ruiz-Duenas, Francisco J., Sabat, Grzegorz, Salamov, Asaf, Samejima, Masahiro, Schmutz, Jeremy, Slot, Jason C., St. John, Franz, Stenlid, Jan, Henrissat, Bernard, Sun, Hui, Sun, Sheng, Syed, Khajamohiddin, Tsang, Adrian, Wiebenga, Ad, Young, Darcy, Pisabarro, Antonio, Eastwood, Daniel C., Martin, Francis, Cullen, Dan, Martínez, Angel T., Grigoriev, Igor V., Hibbett, David S., Otillar, Robert, and Spatafora, Joseph W.
Abstract:: Wood is a major pool of organic carbon that is highly resistant to decay, owing largely to the presence of lignin. The only organisms capable of substantial lignin decay are white rot fungi in the Agaricomycetes, which also contains non–lignin-degrading brown rot and ectomycorrhizal species. Comparative analyses of 31 fungal...
Resource Type:: Article

Nomenclature report on rice WRKY’s - Conflict regarding gene names and its solution

Creator:: Shen, Qingxi J., Yu, Diqiu, Jeon, Jong-Seong, Piffanelli, Pietro, Abbruscato, Pamela, Guo, Ze-Jian, Zhang, Yuanji, Itoh, Takeshi, Lee, Sung S., Buell, C. Robin, Nagato, Yasuo, McCouch, Susan, Yano, Masahiro, Wang, Guo-liang, Jena, Kshirod K., Xiong, Lizhong, Meyers, Blake, Jaiswal, Pankaj, and Yamazaki, Yukiko
Abstract:: Background: Since whole genome sequences of rice were made publically accessible, the number of articles on new rice genes has increased remarkably. The Committee on Gene Symbolization, Nomenclature and Linkage (CGSNL) of the Rice Genetics Cooperative published the gene nomenclature system for rice and encouraged researchers to follow the rules...
Resource Type:: Article
Full Text:: the studies were published. In some cases, a sequence in the DNA data banks and/or in the genome

Community Ecology of Foliar Fungi and Oomycetes of Pseudotsuga menziesii on the Pacific Northwest Coast

Creator:: Gonen, Lilah
Abstract:: Pseudotsuga menziesii var. menziesii (coast Douglas-fir) is a tree of ecological, economic, and cultural value in its native North American Pacific Northwest (PNW) distribution. P. menziesii is host to a variety of well-documented endophytic foliar microorganisms, including the fungus Nothophaeocryptopus gaeumannii, the causal agent of Swiss needle cast (SNC), and...
Resource Type:: Masters Thesis
Full Text:: Jared LeBoldus Pseudotsuga menziesii var. menziesii (coast Douglas-fir) is a tree of

Genomic Investigations of Diversity within the Milkweed Genus Asclepias, at Multiple Scales

Creator:: Weitemier, Kevin A.
Abstract:: At a time when the biodiversity on Earth is being rapidly lost, new technologies and methods in genomic analysis are fortunately allowing scientists to catalog and explore the diversity that remains more efficiently and precisely. The studies in this dissertation investigate genomic diversity within the milkweed genus, Asclepias, at multiple...
Resource Type:: Dissertation
Full Text:: AN ABSTRACT OF THE DISSERTATION OF Kevin A. Weitemier for

ScholarsArchive@OSU

Influence of a sudangrass green manure on microorganisms and early dying of potatoes in two soils

Latent homology and convergent regulatory evolution underlies the repeated emergence of yeasts

Castilleja and Pedicularis are confirmed as telial hosts for white pine blister rust in whitebark pine ecosystems of Oregon and Washington

Diverse Lifestyles and Strategies of Plant Pathogenesis Encoded in the Genomes of Eighteen Dothideomycetes Fungi

Biomass dynamics of dead Douglas-fir and western hemlock boles in mid-elevation forests of the Cascade Range

Comparative Genome Structure, Secondary Metabolite, and Effector Coding Capacity across Cochliobolus Pathogens

The Paleozoic Origin of Enzymatic Lignin Decomposition Reconstructed from 31 Fungal Genomes

Nomenclature report on rice WRKY’s - Conflict regarding gene names and its solution

Community Ecology of Foliar Fungi and Oomycetes of Pseudotsuga menziesii on the Pacific Northwest Coast

Genomic Investigations of Diversity within the Milkweed Genus Asclepias, at Multiple Scales

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