Index Catalog // ScholarsArchive@OSU

Emerging semantics to link phenotype and environment

Creator:: Thessen, Anne E., Bunkers, Daniel E., Buttigieg, Pier Luigi, Cooper, Laurel D., Dahdul, Wasila M., Domisch, Sami, Franz, Nico M., Jaiswal, Pankaj, Lawrence-Dill, Carolyn J., Midford, Peter E., Mungall, Christopher J., Ramírez, Martín J., Specht, Chelsea D., Vogt, Lars, Aldo Vos, Rutger, Walls, Ramona L., White, Jeffrey W., Zhang, Guanyang, Deans, Andrew R., Huala, Eva, Lewis, Suzanna E., and Mabee, Paula M.
Abstract:: Understanding the interplay between environmental conditions and phenotypes is a fundamental goal of biology. Unfortunately, data that include observations on phenotype and environment are highly heterogeneous and thus difficult to find and integrate. One approach that is likely to improve the status quo involves the use of ontologies to standardize...
Resource Type:: Article
Full Text:: to link phenotype and environment. PeerJ, 3, e1470. doi:10.7717/peerj.1470 10.7717/peerj.1470

Supplemental data to "A draft genome and transcriptome of common milkweed (Asclepias syriaca) as resources for evolutionary, ecological, and molecular studies in milkweeds and Apocynaceae"

Creator:: Weitemier, Kevin A.
Abstract:: This dataset contains a draft assembly of the common milkweed (Asclepias syriaca) nuclear genome, linkage group information, and gene family counts for Asclepias and related species. The genome assembly is accompanied by annotation of gene models, repeat models, transfer RNAs, and open reading frames, and mapping information of Asclepias transcripts,...
Resource Type:: Dataset

Genomic Resources for Phylogenetics, Species Delimitation, and Geographic Localization of Neotropical Tree Species Cedrela odorata L. (Meliaceae)

Creator:: Finch, Kristen N.
Abstract:: Biodiversity loss is of global concern, and is due in part to deforestation and high consumer demand for wood and wood products. The neotropical tree species Cedrela odorata (“Spanish cedar” or “cedro”) is economically valuable for its wood and faces threats of overexploitation. Due to strong similarities in wood features...
Resource Type:: Dissertation

The Fungal Microbiome Associated with Grapevine Trunk Disease in Oregon Vineyards

Creator:: Zimmerman, Jessie
Abstract:: Grapevine Trunk Diseases (GTDs) are caused by a group of fungal pathogens that attack the xylem tissue of mature grapevines worldwide. In the past 30 years, their incidence has increased, both in emerging grape-producing regions, as well as those with an extended history of viticulture. In the same time span,...
Resource Type:: Masters Thesis

Unearthing the Cretaceous Diversification of Cornales

Creator:: Atkinson, Brian A.
Abstract:: The order Cornales (dogwoods) is the earliest diverging lineage within the most diverse group of flowering plants, the asterids (>80,000 species). Although molecular phylogenetics have significantly improved our understanding of cornalean systematics, early phylogenetic relationships remain uncertain due to an initial rapid radiation. The fossil record of Cornales is extensive...
Resource Type:: Dissertation

Genomic Investigations of Diversity within the Milkweed Genus Asclepias, at Multiple Scales

Creator:: Weitemier, Kevin A.
Abstract:: At a time when the biodiversity on Earth is being rapidly lost, new technologies and methods in genomic analysis are fortunately allowing scientists to catalog and explore the diversity that remains more efficiently and precisely. The studies in this dissertation investigate genomic diversity within the milkweed genus, Asclepias, at multiple...
Resource Type:: Dissertation

Genetic Structure in Populations of the Douglas-fir Swiss Needle Cast Fungus Nothophaeocryptopus gaeumannii

Creator:: Bennett, Patrick I.
Abstract:: The fungus Nothophaeocryptopus gaeumannii is the causative agent of Swiss needle cast (SNC), a foliar disease of Douglas-fir. Disease is characterized by premature loss of foliage and reduced growth resulting from the inhibition of photosynthesis due to the occlusion of stomata by the ascocarps of N. gaeumannii. Although the disease...
Resource Type:: Dissertation

Community Ecology of Foliar Fungi and Oomycetes of Pseudotsuga menziesii on the Pacific Northwest Coast

Creator:: Gonen, Lilah
Abstract:: Pseudotsuga menziesii var. menziesii (coast Douglas-fir) is a tree of ecological, economic, and cultural value in its native North American Pacific Northwest (PNW) distribution. P. menziesii is host to a variety of well-documented endophytic foliar microorganisms, including the fungus Nothophaeocryptopus gaeumannii, the causal agent of Swiss needle cast (SNC), and...
Resource Type:: Masters Thesis

Susceptibility of Hop Crown Buds to Powdery Mildew and its Relation to Perennation of Podosphaera macularis

Creator:: Gent, David H., Claassen, Briana J., Twomey, Megan C., Wolfenbarger, Sierra N., and Woods, Joanna L.
Abstract:: In the Pacific Northwestern United States, the hop powdery mildew fungus, Podosphaera macularis, survives overwintering periods in association with living host tissue because the ascigerious stage of the pathogen is not known to occur in this region. Field experiments were conducted over a 5-year period to describe the overwintering process...
Resource Type:: Article

Development and Application of Tools for Genetic Analysis of Clonal Populations

Creator:: Kamvar, Zhian N.
Abstract:: Research on the population genetics of microbial organisms requires the use of specialized analyses designed for clonal organisms to avoid violating the assumptions of traditional population genetic models. The tools necessary for performing these analyses existed as a set of unrelated software with non-overlapping capabilities and did not cover all...
Resource Type:: Dissertation
Full Text:: Reproduction Zhian N. Kamvar, Javier F. Tabima, and Niklaus J. Grünwald Journal: PeerJ PO Box 614, Corte

ScholarsArchive@OSU

Emerging semantics to link phenotype and environment

Supplemental data to "A draft genome and transcriptome of common milkweed (Asclepias syriaca) as resources for evolutionary, ecological, and molecular studies in milkweeds and Apocynaceae"

Genomic Resources for Phylogenetics, Species Delimitation, and Geographic Localization of Neotropical Tree Species Cedrela odorata L. (Meliaceae)

The Fungal Microbiome Associated with Grapevine Trunk Disease in Oregon Vineyards

Unearthing the Cretaceous Diversification of Cornales

Genomic Investigations of Diversity within the Milkweed Genus Asclepias, at Multiple Scales

Genetic Structure in Populations of the Douglas-fir Swiss Needle Cast Fungus Nothophaeocryptopus gaeumannii

Community Ecology of Foliar Fungi and Oomycetes of Pseudotsuga menziesii on the Pacific Northwest Coast

Susceptibility of Hop Crown Buds to Powdery Mildew and its Relation to Perennation of Podosphaera macularis

Development and Application of Tools for Genetic Analysis of Clonal Populations

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