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Petre-Miller, Daniel S.
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Botany and Plant Pathology
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- Creator:
- Bushley, Kathryn E., Raja, Rajani, Jaiswal, Pankaj, Cumbie, Jason S., Nonogaki, Mariko, Boyd, Alexander E., Owensby, C. Alisha, Knaus, Brian J., Elser, Justin, Miller, Daniel, Di, Yanming, McPhail, Kerry L., and Spatafora, Joseph W.
- Abstract:
- The ascomycete fungus Tolypocladium inflatum, a pathogen of beetle larvae, is best known as the producer of the immunosuppressant drug cyclosporin. The draft genome of T. inflatum strain NRRL 8044 (ATCC 34921), the isolate from which cyclosporin was first isolated, is presented along with comparative analyses of the biosynthesis of...
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- Article
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- *, Rajani Raja1, Pankaj Jaiswal1, Jason S. Cumbie1, Mariko Nonogaki2, Alexander E. Boyd3, C. Alisha
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- Creator:
- Loper, Joyce E., Hassan, Karl A., Mavrodi, Dmitri V., Davis, Edward W., II, Lim, Chee Kent, Shaffer, Brenda T., Elbourne, Liam D. H., Stockwell, Virginia O., Hartney, Sierra L., Breakwell, Katy, Henkels, Marcella D., Tetu, Sasha G., Rangel, Lorena I., Kidarsa, Teresa A., Wilson, Neil L., van de Mortel, Judith E., Song, Chunxu, Blumhagen, Rachel, Radune, Diana, Hostetler, Jessica B., Brinkac, Lauren M., Durkin, A. Scott, Kluepfel, Daniel A., Wechter, W. Patrick, Anderson, Anne J., Kim, Young Cheol, Pierson, Leland S., III, Pierson, Elizabeth A., Lindow, Steven E., Kobayashi, Donald Y., Raaijmakers, Jos M., Weller, David M., Thomashow, Linda S., Allen, Andrew E., and Paulsen, Ian T.
- Abstract:
- We provide here a comparative genome analysis of ten strains within the Pseudomonas fluorescens group including seven new genomic sequences. These strains exhibit a diverse spectrum of traits involved in biological control and other multitrophic interactions with plants, microbes, and insects. Multilocus sequence analysis placed the strains in three sub-clades,...
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- Article
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- Durkin6, Daniel A. Kluepfel7, W. Patrick Wechter8, Anne J. Anderson9, Young Cheol Kim10, Leland S
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- Creator:
- Loper, Joyce E., Hassan, Karl A., Mavrodi, Dmitri V., Davis, Edward W., II, Lim, Chee Kent, Shaffer, Brenda T., Elbourne, Liam D. H., Stockwell, Virginia O., Hartney, Sierra L., Breakwell, Katy, Henkels, Marcella D., Tetu, Sasha G., Rangel, Lorena I., Kidarsa, Teresa A., Wilson, Neil L., van de Mortel, Judith E., Song, Chunxu, Blumhagen, Rachel, Radune, Diana, Hostetler, Jessica B., Brinkac, Lauren M., Durkin, A. Scott, Kluepfel, Daniel A., Wechter, W. Patrick, Anderson, Anne J., Kim, Young Cheol, Pierson, Leland S., III, Pierson, Elizabeth A., Lindow, Steven E., Kobayashi, Donald Y., Raaijmakers, Jos M., Weller, David M., Thomashow, Linda S., Allen, Andrew E., and Paulsen, Ian T.
- Abstract:
- We provide here a comparative genome analysis of ten strains within the Pseudomonas fluorescens group including seven new genomic sequences. These strains exhibit a diverse spectrum of traits involved in biological control and other multitrophic interactions with plants, microbes, and insects. Multilocus sequence analysis placed the strains in three sub-clades,...
- Resource Type:
- Article
- Full Text:
- Durkin6, Daniel A. Kluepfel7, W. Patrick Wechter8, Anne J. Anderson9, Young Cheol Kim10, Leland S
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- Creator:
- Padamsee, Mahajabeen, Kumar, T. K. Arun, Riley, Robert, Binder, Manfred, Boyd, Alex, Calvo, Ana M., Furukawa, Kentaro, Hesse, Cedar, Hohmann, Stefan, James, Tim Y., LaButti, Kurt, Lapidus, Alla, Lindquist, Erika, Lucas, Susan, Miller, Kari, Shantappa, Sourabha, Grigoriev, Igor V., Hibbett, David S., McLaughlin, David J., Spatafora, Joseph W., and Aime, M. Catherine
- Abstract:
- Wallemia (Wallemiales, Wallemiomycetes) is a genus of xerophilic Fungi of uncertain phylogenetic position within Basidiomycota. Most commonly found as food contaminants, species of Wallemia have also been isolated from hypersaline environments. The ability to tolerate environments with reduced water activity is rare in Basidiomycota. We sequenced the genome of W....
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- Article
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- , Erika Lindquist c, Susan Lucas c, Kari Miller b, Sourabha Shantappa f, Igor V. Grigoriev c,1, David S
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- Creator:
- Floudas, Dimitrios, Yadav, Jagjit S., Aerts, Andrea, Benoit, Isabelle, Boyd, Alex, Carlson, Alexis, Copeland, Alex, Coutinho, Pedro M., de Vries, Ronald P., Ferreira, Patricia, Findley, Keisha, Binder, Manfred, Foster, Brian, Gaskell, Jill, Glotzer, Dylan, Gorecki, Pawel, Heitman, Joseph, Hesse, Cedar, Hori, Chiaki, Igarashi, Kiyohiko, Jurgens, Joel A., Kallen, Nathan, Riley, Robert, Kersten, Phil, Kohler, Annegret, Kues, Ursula, Kumar, T. K. Arun, Kuo, Alan, LaButti, Kurt, Larrondo, Luis F., Lindquist, Erika, Ling, Albee, Lombard, Vincent, Barry, Kerrie, Lucas, Susan, Lundell, Taina, Martin, Rachael, McLaughlin, David J., Morgenstern, Ingo, Morin, Emanuelle, Murat, Claude, Nagy, Laszlo G., Nolan, Matt, Ohm, Robin A., Blanchette, Robert A., Patyshakuliyeva, Aleksandrina, Rokas, Antonis, Ruiz-Duenas, Francisco J., Sabat, Grzegorz, Salamov, Asaf, Samejima, Masahiro, Schmutz, Jeremy, Slot, Jason C., St. John, Franz, Stenlid, Jan, Henrissat, Bernard, Sun, Hui, Sun, Sheng, Syed, Khajamohiddin, Tsang, Adrian, Wiebenga, Ad, Young, Darcy, Pisabarro, Antonio, Eastwood, Daniel C., Martin, Francis, Cullen, Dan, Martínez, Angel T., Grigoriev, Igor V., Hibbett, David S., Otillar, Robert, and Spatafora, Joseph W.
- Abstract:
- Wood is a major pool of organic carbon that is highly resistant to decay, owing largely to the presence of lignin. The only organisms capable of substantial lignin decay are white rot fungi in the Agaricomycetes, which also contains non–lignin-degrading brown rot and ectomycorrhizal species. Comparative analyses of 31 fungal...
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- Article
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- Creator:
- Gene Ontology Consortium, Berardini, Tanya Z., Li, Donghui, Huala, Eva, Bridges, Susan, Burgess, Shane, McCarthy, Fiona, Carbon, Seth, Lewis, Suzanna E., Mungall, Christopher J., Abdulla, Amina, Wood, Valerie, Feltrin, Erika, Valle, Giorgio, Chisholm, Rex L., Fey, Petra, Gaudet, Pascale, Kibbe, Warren, Basu, Siddhartha, Bushmanova, Yulia, Eilbeck, Karen, Siegele, Deborah A., McIntosh, Brenley, Renfro, Daniel, Zweifel, Adrienne, Hu, James C., Harris, Midori A., Deegan, Jennifer I., Ireland, Amelia, Lomax, Jane, Jaiswal, Pankaj, Chibucos, Marcus, Gwinn-Giglio, Michelle, Wortman, Jennifer, Hannick, Linda, Madupu, Ramana, Botstein, David, Dolinski, Kara, Livstone, Michael S., Oughtred, Rose, Blake, Judith A., Bult, Carol, Diehl, Alexander D., Dolan, Mary, Drabkin, Harold, Eppig, Janan T., Hill, David P., Ni, Li, Ringwald, Martin, Sitnikov, Dmitry, Collmer, Candace, Torto-Alalibo, Trudy, Laulederkind, Stan, Shimoyama, Mary, Twigger, Simon, D'Eustachio, Peter, Matthews, Lisa, Balakrishnan, Rama, Binkley, Gail, Cherry, J. Michael, Christie, Karen R., Costanzo, Maria C., Engel, Stacia R., Fisk, Dianna G., Hirschman, Jodi E., Hitz, Benjamin C., Hong, Eurie L., Krieger, Cynthia J., Miyasato, Stuart R., Nash, Robert S., Park, Julie, Skrzypek, Marek S., Weng, Shuai, Wong, Edith D., Aslett, Martin, Chan, Juancarlos, Kishore, Ranjana, Sternberg, Paul, Van Auken, Kimberly, Khodiyar, Varsha K., Lovering, Ruth C., and Talmud, Philippa J.
- Abstract:
- The Gene Ontology (GO) Consortium (http://www.geneontology.org) (GOC) continues to develop, maintain and use a set of structured, controlled vocabularies for the annotation of genes, gene products and sequences. The GO ontologies are expanding both in content and in structure. Several new relationship types have been introduced and used, along with...
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- Article
- Full Text:
- :10.1093/nar/gkp1018 � The Author(s) 2009. Published by Oxford University Press. This is an Open Access