Index Catalog // ScholarsArchive@OSU

The Plant Structure Ontology, a Unified Vocabulary of Anatomy and Morphology of a Flowering Plant

Creator:: Ilic, Katica, Kellogg, Elizabeth A., Jaiswal, Pankaj, Zapata, Felipe, Stevens, Peter F., Vincent, Leszek P., Avraham, Shulamit, Reiser, Leonore, Pujar, Anuradha, Sachs, Martin M., Whitman, Noah T., McCouch, Susan R., Schaeffer, Mary L., Ware, Doreen H., Stein, Lincoln D., and Rhee, Seung Y.
Abstract:: Formal description of plant phenotypes and standardized annotation of gene expression and protein localization data require uniform terminology that accurately describes plant anatomy and morphology. This facilitates cross species comparative studies and quantitative comparison of phenotypes and expression patterns. A major drawback is variable terminology that is used to describe...
Resource Type:: Article

Whole-Plant Growth Stage Ontology for Angiosperms and Its Application in Plant Biology

Creator:: Pujar, Anuradha, Jaiswal, Pankaj, Kellogg, Elizabeth A., Ilic, Katica, Vincent, Leszek, Avraham, Shulamit, Stevens, Peter, Zapata, Felipe, Reiser, Leonore, Rhee, Seung Y., Sachs, Martin M., Schaeffer, Mary, Stein, Lincoln, Ware, Doreen, and McCouch, Susan
Abstract:: Plant growth stages are identified as distinct morphological landmarks in a continuous developmental process. The terms describing these developmental stages record the morphological appearance of the plant at a specific point in its life cycle. The widely differing morphology of plant species consequently gave rise to heterogeneous vocabularies describing growth...
Resource Type:: Article
Full Text:: Biology Pujar, A., Jaiswal, P., Kellogg, E. A., Ilic, K., Vincent, L., Avraham, S., ... & McCouch, S

The Paleozoic Origin of Enzymatic Lignin Decomposition Reconstructed from 31 Fungal Genomes

Creator:: Floudas, Dimitrios, Yadav, Jagjit S., Aerts, Andrea, Benoit, Isabelle, Boyd, Alex, Carlson, Alexis, Copeland, Alex, Coutinho, Pedro M., de Vries, Ronald P., Ferreira, Patricia, Findley, Keisha, Binder, Manfred, Foster, Brian, Gaskell, Jill, Glotzer, Dylan, Gorecki, Pawel, Heitman, Joseph, Hesse, Cedar, Hori, Chiaki, Igarashi, Kiyohiko, Jurgens, Joel A., Kallen, Nathan, Riley, Robert, Kersten, Phil, Kohler, Annegret, Kues, Ursula, Kumar, T. K. Arun, Kuo, Alan, LaButti, Kurt, Larrondo, Luis F., Lindquist, Erika, Ling, Albee, Lombard, Vincent, Barry, Kerrie, Lucas, Susan, Lundell, Taina, Martin, Rachael, McLaughlin, David J., Morgenstern, Ingo, Morin, Emanuelle, Murat, Claude, Nagy, Laszlo G., Nolan, Matt, Ohm, Robin A., Blanchette, Robert A., Patyshakuliyeva, Aleksandrina, Rokas, Antonis, Ruiz-Duenas, Francisco J., Sabat, Grzegorz, Salamov, Asaf, Samejima, Masahiro, Schmutz, Jeremy, Slot, Jason C., St. John, Franz, Stenlid, Jan, Henrissat, Bernard, Sun, Hui, Sun, Sheng, Syed, Khajamohiddin, Tsang, Adrian, Wiebenga, Ad, Young, Darcy, Pisabarro, Antonio, Eastwood, Daniel C., Martin, Francis, Cullen, Dan, Martínez, Angel T., Grigoriev, Igor V., Hibbett, David S., Otillar, Robert, and Spatafora, Joseph W.
Abstract:: Wood is a major pool of organic carbon that is highly resistant to decay, owing largely to the presence of lignin. The only organisms capable of substantial lignin decay are white rot fungi in the Agaricomycetes, which also contains non–lignin-degrading brown rot and ectomycorrhizal species. Comparative analyses of 31 fungal...
Resource Type:: Article

Grapevine leafroll-associated virus 3

Creator:: Maree, Hans J., Almeida, Rodrigo P. P., Bester, Rachelle, Chooi, Kar Mun, Cohen, Daniel, Dolja, Valerian V., Fuchs, Marc F., Golino, Deborah A., Jooste, Anna E. C., Martelli, Giovanni P., Naidu, Rayapati A., Rowhani, Adib, Saldarelli, Pasquale, and Burger, Johan T.
Abstract:: Grapevine leafroll disease (GLD) is one of the most important grapevine viral diseases affecting grapevines worldwide. The impact on vine health, crop yield, and quality is difficult to assess due to a high number of variables, but significant economic losses are consistently reported over the lifespan of a vineyard if...
Resource Type:: Article

Comparative Genomics of Plant-Associated Pseudomonas spp.: Insights into Diversity and Inheritance of Traits Involved in Multitrophic Interactions

Creator:: Loper, Joyce E., Hassan, Karl A., Mavrodi, Dmitri V., Davis, Edward W., II, Lim, Chee Kent, Shaffer, Brenda T., Elbourne, Liam D. H., Stockwell, Virginia O., Hartney, Sierra L., Breakwell, Katy, Henkels, Marcella D., Tetu, Sasha G., Rangel, Lorena I., Kidarsa, Teresa A., Wilson, Neil L., van de Mortel, Judith E., Song, Chunxu, Blumhagen, Rachel, Radune, Diana, Hostetler, Jessica B., Brinkac, Lauren M., Durkin, A. Scott, Kluepfel, Daniel A., Wechter, W. Patrick, Anderson, Anne J., Kim, Young Cheol, Pierson, Leland S., III, Pierson, Elizabeth A., Lindow, Steven E., Kobayashi, Donald Y., Raaijmakers, Jos M., Weller, David M., Thomashow, Linda S., Allen, Andrew E., and Paulsen, Ian T.
Abstract:: We provide here a comparative genome analysis of ten strains within the Pseudomonas fluorescens group including seven new genomic sequences. These strains exhibit a diverse spectrum of traits involved in biological control and other multitrophic interactions with plants, microbes, and insects. Multilocus sequence analysis placed the strains in three sub-clades,...
Resource Type:: Article
Full Text:: Joyce E. Loper1,2*, Karl A. Hassan3, Dmitri V. Mavrodi4, Edward W. Davis II1, Chee Kent Lim3, Brenda T

Comparative Genomics of Plant-Associated Pseudomonas spp.: Insights into Diversity and Inheritance of Traits Involved in Multitrophic Interactions

Creator:: Loper, Joyce E., Hassan, Karl A., Mavrodi, Dmitri V., Davis, Edward W., II, Lim, Chee Kent, Shaffer, Brenda T., Elbourne, Liam D. H., Stockwell, Virginia O., Hartney, Sierra L., Breakwell, Katy, Henkels, Marcella D., Tetu, Sasha G., Rangel, Lorena I., Kidarsa, Teresa A., Wilson, Neil L., van de Mortel, Judith E., Song, Chunxu, Blumhagen, Rachel, Radune, Diana, Hostetler, Jessica B., Brinkac, Lauren M., Durkin, A. Scott, Kluepfel, Daniel A., Wechter, W. Patrick, Anderson, Anne J., Kim, Young Cheol, Pierson, Leland S., III, Pierson, Elizabeth A., Lindow, Steven E., Kobayashi, Donald Y., Raaijmakers, Jos M., Weller, David M., Thomashow, Linda S., Allen, Andrew E., and Paulsen, Ian T.
Abstract:: We provide here a comparative genome analysis of ten strains within the Pseudomonas fluorescens group including seven new genomic sequences. These strains exhibit a diverse spectrum of traits involved in biological control and other multitrophic interactions with plants, microbes, and insects. Multilocus sequence analysis placed the strains in three sub-clades,...
Resource Type:: Article
Full Text:: Joyce E. Loper1,2*, Karl A. Hassan3, Dmitri V. Mavrodi4, Edward W. Davis II1, Chee Kent Lim3, Brenda T

Global net community production and the putative net heterotrophy of the oligotrophic oceans

Creator:: Westberry, Toby K., Williams, Peter J. le B., and Behrenfeld, Michael J.
Abstract:: Reconciling rates of organic carbon export from the euphotic zone with the consumption of organic material in the dark ocean remains one of the major quantitative uncertainties of the ocean carbon cycle. Euphotic zone net community production (NCP) provides one broad constraint on export flux and potential carbon drawdown. However,...
Resource Type:: Article
Full Text:: physiological nature of the problem remains to be demonstrated. Citation: Westberry, T. K., P. J. le. B

An Extension of the Plant Ontology Project Supporting Wood Anatomy and Development Research

Creator:: Lens, Frederic, Cooper, Laurel, Gandolfo, Maria Alejandra, Groover, Andrew, Jaiswal, Pankaj, Lachenbruch, Barbara, Spicer, Rachel, Staton, Margaret E., Stevenson, Dennis W., Walls, Ramona L., and Wegrzyn, Jill
Abstract:: A wealth of information on plant anatomy and morphology is available in the current and historical literature, and molecular biologists are producing massive amounts of transcriptome and genome data that can be used to gain better insights into the development, evolution, ecology, and physiological function of plant anatomical attributes. Integrating...
Resource Type:: Article
Full Text:: , DW Stevenson). REFERENCES: Agusti, J., R. Lichtenberger, M. Schwarz, L. Nehlin & T. Greb. 2011

Contracting nucleolar vacuoles in somatic tobacco cells growing in microcultures

Creator:: Johnson, John Morris
Abstract:: Contracting nucleolar vacuoles are a general and consistent feature of somatic tobacco cells growing in microcultures. Nucleolar vacuoles were studied in cells from callus tissues of two single-cell clones, H-196 and H-239, of hybrid tobacco (Nicotiana tabacum X N. glutinosa). Vacuoles periodically contracted either completely or incompletely, apparently releasing a...
Resource Type:: Dissertation
Full Text:: helpful suggestions, Mr. and Mrs. Carl T. Johnson, his parents, for their encouragement, Mrs

Systematics of the genus Torrubiella

Creator:: Johnson, Desiree M.
Abstract:: Torrubiella is a genus of entomopathogenic fungi in the Clavicipitaceae (Ascomycota). Species of the genus produce superficial perithecia on a loose mat of hyphae that forms directly on the host. The genus is estimated to contain about 70 species. Torrubiella is hypothesized to be a close relative of Cordyceps because...
Resource Type:: Masters Thesis
Full Text:: finding T luteorostrata in the rainy season and its anamorph, Paecilomyces cinnamomeus in the dry season

ScholarsArchive@OSU

The Plant Structure Ontology, a Unified Vocabulary of Anatomy and Morphology of a Flowering Plant

Whole-Plant Growth Stage Ontology for Angiosperms and Its Application in Plant Biology

The Paleozoic Origin of Enzymatic Lignin Decomposition Reconstructed from 31 Fungal Genomes

Grapevine leafroll-associated virus 3

Comparative Genomics of Plant-Associated Pseudomonas spp.: Insights into Diversity and Inheritance of Traits Involved in Multitrophic Interactions

Comparative Genomics of Plant-Associated Pseudomonas spp.: Insights into Diversity and Inheritance of Traits Involved in Multitrophic Interactions

Global net community production and the putative net heterotrophy of the oligotrophic oceans

An Extension of the Plant Ontology Project Supporting Wood Anatomy and Development Research

Contracting nucleolar vacuoles in somatic tobacco cells growing in microcultures

Systematics of the genus Torrubiella

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