Index Catalog // ScholarsArchive@OSU

Ferric-Pyoverdine Recognition by Fpv Outer Membrane Proteins of Pseudomonas protegens Pf-5

Creator:: Hartney, Sierra L., Mazurier, Sylvie, Girard, Maeva K., Mehnaz, Samina, Davis, Edward W. II, Gross, Harald, Lemanceau, Philippe, and Loper, Joyce E.
Abstract:: The soil bacterium Pseudomonas protegens Pf-5 (previously called P. fluorescens Pf-5) produces two siderophores, enantio-pyochelin and a compound in the large and diverse pyoverdine family. Using high-resolution mass spectroscopy, we determined the structure of the pyoverdine produced by Pf-5. In addition to producing its own siderophores, Pf-5 also utilizes ferric...
Resource Type:: Article
Full Text:: strains of Pseudomonas spp. as sources of iron. Previously, phylogenetic analysis of the 45 TonB-dependent

Gene expression and intercellular transport of beet yellows closterovirus examined using tagged virus variants

Creator:: Hagiwara, Yuka
Resource Type:: Masters Thesis
Full Text:: Accumulation of the Genomic and sg RNAs in Wild-type BYY.······ 20 2.4.4 Comparative Analysis of the Four BYV

Preliminary Genomic Characterization of Ten Hardwood Tree Species from Multiplexed Low Coverage Whole Genome Sequencing

Creator:: Staton, Margaret, Best, Teodora, Khodwekar, Sudhir, Owusu, Sandra, Xu, Tao, Xu, Yi, Jennings, Tara, Cronn, Richard, Arumuganathan, A. Kathiravetpilla, Coggeshall, Mark, Gailing, Oliver, Liang, Haiying, Romero-Severson, Jeanne, Schlarbaum, Scott, and Carlson, John E.
Abstract:: Forest health issues are on the rise in the United States, resulting from introduction of alien pests and diseases, coupled with abiotic stresses related to climate change. Increasingly, forest scientists are finding genetic/genomic resources valuable in addressing forest health issues. For a set of ten ecologically and economically important native...
Resource Type:: Article
Full Text:: only two of the ten hardwood species evaluated in this study: 489Mb for tetraploid black cherry [45

Analysis of the VPg-Proteinase (NIa) Encoded by Tobacco Etch Potyvirus: Effects of Mutations on Subcellular Transport, Proteolytic Processing, and Genome Amplification

Creator:: Schadd, Mary C., Haldeman-Chahill, Ruth, Cronin, Stephen, and Carrington, James C.
Abstract:: A mutational analysis was conducted to investigate the functions of the tobacco etch potyvirus VPgproteinase (NIa) protein in vivo. The NIa N-terminal domain contains the VPg attachment site, whereas the C-terminal domain contains a picornavirus 3C-like proteinase. Cleavage at an internal site separating the two domains occurs in a subset...
Resource Type:: Article
Full Text:: so fN L S m ut at io ns on N Ia -m ed ia te d nu cl ea rt ra ns lo ca tio n in tr an sg en ic an d in

Scratching the Surface of the Potato Geocaulosphere: Characterizing the Microbiome of Seed Tuber Tare Soil and its Impact on the Rhizosphere Microbiome

Creator:: Delventhal, Kayla D.
Abstract:: For tuberizing crops like potato (Solanum tuberosum), the geocaulosphere, or the zone of soil in contact with and influenced by the tuber, is a distinct sphere of microbial life and represents an important interface between the potato crop and the soil environment. Upon potato harvest, specific geocaulosphere soil called tare...
Resource Type:: Masters Thesis
Full Text:: microbiome inclusion thresholds for A) Fungi and B) Bacteria…………………….45 3.1 Distance-based redundancy

Effect of Tannic Acid on the Transcriptome of the Soil Bacterium Pseudomonas protegens Pf-5

Creator:: Lim, Chee Kent, Penesyan, Anahit, Hassan, Karl A., Loper, Joyce E., and Paulsen, Ian T.
Abstract:: Tannins are a diverse group of plant-produced, polyphenolic compounds with metal-chelating and antimicrobial properties that are prevalent in many soils. Using transcriptomics, we determined that tannic acid, a form of hydrolysable tannin, broadly affects the expression of genes involved in iron and zinc homeostases, sulfur metabolism, biofilm formation, motility, and...
Resource Type:: Article
Full Text:: -like protein (44) involved in murein hydrolase activity, oxidative stress, and penicillin tolerance (45

Fungal endophyte diversity in foliage of native and cultivated Rhododendron species determined by culturing, ITS sequencing, and pyrosequencing

Creator:: Raizen, Nathaniel L.
Abstract:: Western Oregon is home to native Rhododendron species and is the center for cultivated Rhododendron production in the United States. These Rhododendron spp. are known to be infected with fungal endophytes. However, the community structure of these endophytes in native and cultivated Rhododendron is poorly understood. Our study targeted the...
Resource Type:: Masters Thesis
Full Text:: Page Figure 1. Map of Rhododendron sample collection sites.……..…………..… 45 Figure 2. Rarefaction

Development of Molecular Markers for Determining Continental Origin of Wood from White Oaks (Quercus L. sect. Quercus)

Creator:: Schroeder, Hilke, Cronn, Richard, Yanbaev, Yulai, Jennings, Tara, Mader, Malte, Degen, Bernd, and Kersten, Birgit
Abstract:: To detect and avoid illegal logging of valuable tree species, identification methods for the origin of timber are necessary. We used next-generation sequencing to identify chloroplast genome regions that differentiate the origin of white oaks from the three continents; Asia, Europe, and North America. By using the chloroplast genome of...
Resource Type:: Article
Full Text:: -denaturation step at 94°C for 10 min, followed by 25 to 30 cycles of 94°C for 45 sec (30 sec trnCD), suitable

Cytokinin O-glycosyltransferases : biochemical characteristics in vitro and developmental regulation in transgenic plants

Creator:: Veach, Yeonjin Kim
Abstract:: Cytokinins are plant hormones regulating cell division and differentiation. Most developmental events from germination, vegetative morphogenesis to seed and fruit set are influenced by cytokinins. t,ns-Zeatin is the major natural occurring cytokinin. Its isomer, cis-zeatin, and its derivatives are usually present in low quantities and have traditionally been considered as...
Resource Type:: Masters Thesis
Full Text:: ............................................................. 43 Induction conditions ................................................. 45 Results

Comparative Genomics of a Plant-Pathogenic Fungus, Pyrenophora tritici-repentis, Reveals Transduplication and the Impact of Repeat Elements on Pathogenicity and Population Divergence

Creator:: Manning, Viola A., Pandelova, Iovanna, Dhillon, Braham, Wilhelm, Larry J., Goodwin, Stephen B., Berlin, Aaron M., Figueroa, Melania, Freitag, Michael, Hane, James K., Henrissat, Bernard, Holman, Wade H., Kodira, Chinnappa D., Martin, Joel, Oliver, Richard P., Robbertse, Barbara, Schackwitz, Wendy, Schwartz, David C., Spatafora, Joseph W., Turgeon, B. Gillian, Yandava, Chandri, Young, Sarah, Zhou, Shiguo, Zeng, Qiandong, Grigoriev, Igor V., Ma, Li-Jun, and Ciuffetti, Lynda M.
Abstract:: Pyrenophora tritici-repentis is a necrotrophic fungus causal to the disease tan spot of wheat, whose contribution to crop loss has increased significantly during the last few decades. Pathogenicity by this fungus is attributed to the production of host-selective toxins ( HST), which are recognized by their host in a genotype-specific...
Resource Type:: Article
Full Text:: 45 sec, 58� for 45 sec, 72� for 1 min 30 sec, followed by 1 cycle at 72� for 7 min and a 4� hold. The

ScholarsArchive@OSU

Ferric-Pyoverdine Recognition by Fpv Outer Membrane Proteins of Pseudomonas protegens Pf-5

Gene expression and intercellular transport of beet yellows closterovirus examined using tagged virus variants

Preliminary Genomic Characterization of Ten Hardwood Tree Species from Multiplexed Low Coverage Whole Genome Sequencing

Analysis of the VPg-Proteinase (NIa) Encoded by Tobacco Etch Potyvirus: Effects of Mutations on Subcellular Transport, Proteolytic Processing, and Genome Amplification

Scratching the Surface of the Potato Geocaulosphere: Characterizing the Microbiome of Seed Tuber Tare Soil and its Impact on the Rhizosphere Microbiome

Effect of Tannic Acid on the Transcriptome of the Soil Bacterium Pseudomonas protegens Pf-5

Fungal endophyte diversity in foliage of native and cultivated Rhododendron species determined by culturing, ITS sequencing, and pyrosequencing

Development of Molecular Markers for Determining Continental Origin of Wood from White Oaks (Quercus L. sect. Quercus)

Cytokinin O-glycosyltransferases : biochemical characteristics in vitro and developmental regulation in transgenic plants

Comparative Genomics of a Plant-Pathogenic Fungus, Pyrenophora tritici-repentis, Reveals Transduplication and the Impact of Repeat Elements on Pathogenicity and Population Divergence

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