Background: DNA barcoding of rain forest trees could potentially help biologists identify species and discover new ones. However, DNA barcodes cannot always distinguish between closely related species, and the size and completeness of barcode databases are key parameters for their successful application. We test the ability of rbcL, matK and...
Recent investigations indicate that several latent viruses of
apples exist in common commercial apple stocks, but these viruses
and their relationships are incompletely understood. This thesis
describes investigations of crab apples as indicators of latent viruses
of apples.
Eighty-eight varieties and species of crab apples were tested
as indicators of...
Western Oregon is home to native Rhododendron species and is the center for cultivated
Rhododendron production in the United States. These Rhododendron spp. are known to
be infected with fungal endophytes. However, the community structure of these
endophytes in native and cultivated Rhododendron is poorly understood. Our study
targeted the...
For tuberizing crops like potato (Solanum tuberosum), the geocaulosphere, or the zone of soil in contact with and influenced by the tuber, is a distinct sphere of microbial life and represents an important interface between the potato crop and the soil environment. Upon potato harvest, specific geocaulosphere soil called tare...
To detect and avoid illegal logging of valuable tree species, identification methods for the origin of timber are necessary. We used next-generation sequencing to identify chloroplast genome regions that differentiate the origin of white oaks from the three continents; Asia, Europe, and North America. By using the chloroplast genome of...
Tannins are a diverse group of plant-produced, polyphenolic compounds with metal-chelating and antimicrobial properties that are prevalent in many soils. Using transcriptomics, we determined that tannic acid, a form of hydrolysable tannin, broadly affects the expression of genes involved in iron and zinc homeostases, sulfur metabolism, biofilm formation, motility, and...
Cytokinins are plant hormones regulating cell division and differentiation.
Most developmental events from germination, vegetative morphogenesis to seed
and fruit set are influenced by cytokinins. t,ns-Zeatin is the major natural
occurring cytokinin. Its isomer, cis-zeatin, and its derivatives are usually present in
low quantities and have traditionally been considered as...
Pyrenophora tritici-repentis is a necrotrophic fungus causal to the disease tan spot of wheat, whose contribution to crop loss has increased significantly during the last few decades. Pathogenicity by this fungus is attributed to the production of host-selective toxins ( HST), which are recognized by their host in a genotype-specific...
Growth and replacement patterns of four successionally important
species occurring on Douglas fir clear-cuts were investigated
from September 1964 to June 1967. The study was carried out
on the Marys Peak watershed located near Corvallis, Oregon.
Species used in the study include Holcus lanatus, Senecio
jacobaea, Lotus crassifolius var. subglaber,...