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  • Computational Approaches for RNA Structure Prediction with Dynamic Programming and Deep Neural Networks

    Creator:
    Deng, Dezhong
    Abstract:
    Our goal is to build a system to model the RNA sequences that reveals their structural information by using efficient dynamic programming algorithms and deep learning approaches. We aim to 1) achieve linear-time for RNA secondary structure prediction based on existing minimum free energy models; 2) utilize deep neural networks...
    Resource Type:
    Dissertation
    Full Text:
    degree of Doctor of Philosophy in Computer Science presented on December 10, 2019. Title

  • Interactive fault localization techniques to empower the debugging efforts of end-user programmers

    Creator:
    Ruthruff, Joseph Ronald
    Abstract:
    End users develop more software than any other group of programmers, using software authoring devices such as e-mail filtering editors, by-demonstration macro builders, and spreadsheet environments. Despite this, there has been only a little research on finding ways to help these programmers with the dependability of the software they create....
    Resource Type:
    Masters Thesis
    Full Text:
    . (Following standard terminology [6], in this thesis, afailure is an incorrect computational result, and

  • Machine learning methods for public policy : simulation, optimization, and visualization

    Creator:
    McGregor, Sean
    Abstract:
    Society faces many complex management problems, particularly in the area of shared public resources such as ecosystems. Existing decision making processes are often guided by personal experience and political ideology rather than state-of-the-art scientific understanding. This dissertation envisions a future in which multiple stakeholders are provided with computational tools for...
    Resource Type:
    Dissertation
    Full Text:
    envisions a future in which multiple stakeholders are provided with computational tools for formalizing

  • Interpretable Machine Learning: Applications in Biology and Genomics

    Creator:
    Danaee, Padideh
    Abstract:
    Machine learning (ML) and deep learning (DL) models impact our daily lives with applications in natural language modeling, image analysis, healthcare, genomics, and bioinformatics. The exponential growth of biological sequence data necessitates accompanying advances in computational methods. Although deep learning is highly effective for detecting and classifying biological sequences, challenges...
    Resource Type:
    Dissertation
    Full Text:
    sequence data necessitates accompanying advances in computational methods. Although deep learning is

  • Deep Learning for Human and Biological Languages

    Creator:
    Hong, Junki
    Abstract:
    We explore the application of deep learning to the disparate fields of natural language processing and computational biology. Both the sentences uttered by humans as well as the RNA and protein sequences found within the cells of their bodies can be considered formal languages in computer science, as sets of...
    Resource Type:
    Dissertation
    Full Text:
    degree of Doctor of Philosophy in Computer Science presented on June 7, 2022. Title: Deep Learning for

  • Incorporating and Learning Behavior Constraints for Sequential Decision Making

    Creator:
    Pinto, Jervis
    Abstract:
    Writing a program that performs well in a complex environment is a challenging task. In such problems, a method of deterministic programming combined with reinforcement learning (RL) can be helpful. However, current systems either force developers to encode knowledge in very specific forms (e.g., state-action features), or assume advanced RL...
    Resource Type:
    Dissertation
    Full Text:
    - making at significant computational cost. We propose a new type of behavior constraint in the form of

  • Multiagent learning for locomotion and coordination in tensegrity robotics

    Creator:
    Iscen, Atil
    Abstract:
    Tensegrity structures are composed of pure compressional elements that are connected via a network of pure tensional elements. The concept of tensegrity promises numerous advantages to the field of robotics. Tensegrity robots are, however, notoriously difficult to control due to their oscillatory nature and nonlinear interaction between the components. Multiagent...
    Resource Type:
    Dissertation
    Full Text:
    of Doctor of Philosophy in Computer Science and Mechanical Engineering presented on May 14, 2014

  • Advanced separation of concerns and the compatibility of aspect-orientation

    Creator:
    Dechow, Doug
    Abstract:
    The appropriate separation of concerns is a fundamental engineering principle. A concern, for software developers, is that which must be represented by code in a program; by extension, separation of concerns is the ability to represent a single concern in a single appropriate programming language construct. Advanced separation of concerns...
    Resource Type:
    Dissertation
    Full Text:
    degree of Doctor of Philosophy in Computer Science presented on March 18, 2005. Title: Advanced

  • Variational Satisfiability Solving

    Creator:
    Young, Jeffrey M.
    Abstract:
    Over the last two decades, satisfiability and satisfiability-modulo theory (SAT/SMT) solvers have grown powerful enough to be general purpose reasoning engines throughout software engineering and computer science. However, most practical use cases of SAT/SMT solvers require not just solving a single SAT/SMT problem, but solving sets of related SAT/SMT problems....
    Resource Type:
    Dissertation
    Full Text:
    the degree of Doctor of Philosophy in Computer Science presented on June 11, 2021. Title

  • Computing Resource Usage as a Factor of Student Success

    Creator:
    Moissinac, Béatrice
    Abstract:
    Learning Analytics and other branches of Educational Research such as Computing Education Research (CER) implicitly assume that students, especially college students, have no barriers to access learning platforms or software packages. This assumption may be attributed to such pervasive beliefs such as "everyone has a device", or "everyone can access...
    Resource Type:
    Dissertation
    Full Text:
    the degree of Doctor of Philosophy in Computer Science presented on October 11, 2019. Title