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Filtering by: Creator Fox, David S. Remove constraint Creator: Fox, David S. Academic Affiliation Electrical Engineering and Computer Science Remove constraint Academic Affiliation: Electrical Engineering and Computer Science Committee Member Tadepalli, Prasad Remove constraint Committee Member: Tadepalli, Prasad

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  • Computational Approaches for RNA Structure Prediction with Dynamic Programming and Deep Neural Networks

    Creator:
    Deng, Dezhong
    Abstract:
    Our goal is to build a system to model the RNA sequences that reveals their structural information by using efficient dynamic programming algorithms and deep learning approaches. We aim to 1) achieve linear-time for RNA secondary structure prediction based on existing minimum free energy models; 2) utilize deep neural networks...
    Resource Type:
    Dissertation
    Full Text:
    Abstract approved: David A. Hendrix Our goal is to build a system to model the RNA sequences that reveals

  • Deep Learning for Human and Biological Languages

    Creator:
    Hong, Junki
    Abstract:
    We explore the application of deep learning to the disparate fields of natural language processing and computational biology. Both the sentences uttered by humans as well as the RNA and protein sequences found within the cells of their bodies can be considered formal languages in computer science, as sets of...
    Resource Type:
    Dissertation
    Full Text:
    Human and Biological Languages Abstract approved: David Hendrix and Liang Huang We explore the

  • Interpretable Machine Learning: Applications in Biology and Genomics

    Creator:
    Danaee, Padideh
    Abstract:
    Machine learning (ML) and deep learning (DL) models impact our daily lives with applications in natural language modeling, image analysis, healthcare, genomics, and bioinformatics. The exponential growth of biological sequence data necessitates accompanying advances in computational methods. Although deep learning is highly effective for detecting and classifying biological sequences, challenges...
    Resource Type:
    Dissertation
    Full Text:
    Machine Learning: Applications in Biology and Genomics Abstract approved: David A. Hendrix Machine

  • A Distributed Scheme for Accelerating and Scaling PSPNet

    Creator:
    Krishna, Ajay
    Abstract:
    Advances in deep learning based image processing have led to their adoption for a wide range of applications, and in tow with these developments is a dramatic increase in the availability of high quality datasets. With this comes the need to accelerate and scale deep learning applications in order to...
    Resource Type:
    Masters Thesis
    Full Text:
    thesis committee, Dr. Prasad Tadepalli and Dr. David Roundy, for their insightful comments and timely

  • Multiagent learning for locomotion and coordination in tensegrity robotics

    Creator:
    Iscen, Atil
    Abstract:
    Tensegrity structures are composed of pure compressional elements that are connected via a network of pure tensional elements. The concept of tensegrity promises numerous advantages to the field of robotics. Tensegrity robots are, however, notoriously difficult to control due to their oscillatory nature and nonlinear interaction between the components. Multiagent...
    Resource Type:
    Dissertation
    Full Text:
    speeds. Even if it is trained with a robot that has motors with 0.2 m/s speed, it can still roll with

  • Model-based approximation methods for reinforcement learning

    Creator:
    Wang, Xin
    Abstract:
    The thesis focuses on model-based approximation methods for reinforcement learning with large scale applications such as combinatorial optimization problems. First, the thesis proposes two new model-based methods to stablize the value–function approximation for reinforcement learning. The first one is the BFBP algorithm, a batch-like reinforcement learning process which iterates between...
    Resource Type:
    Dissertation
    Full Text:
    learn- ing algorithm. In our approach, we learn the models P (s′|s, a) and R(s′|s, a), and then use

  • Object highlighting : real-time boundary detection using a Bayesian network

    Creator:
    Jia, Jin
    Abstract:
    Image segmentation continues to be a fundamental problem in computer vision and image understanding. In this thesis, we present a Bayesian network that we use for object boundary detection in which the MPE (most probable explanation) before any evidence can produce multiple non-overlapping, non-self-intersecting closed contours and the MPE with...
    Resource Type:
    Masters Thesis
    Full Text:
    thank Professor Ron Metoyer, Professor Prasad Tadepalli and Professor David Birkes for being on my

  • Representationally Robust and Scalable Learning over Relational Databases

    Creator:
    Picado Leiva, Jose Manuel
    Abstract:
    Learning novel concepts from relational databases is an important problem with applications in several disciplines, such as data management, natural language processing, and bioinformatics. For a learning algorithm to be effective, the input data should be clean and in some desired representation. However, real-world data is usually heterogeneous – the...
    Resource Type:
    Dissertation
    Full Text:
    : Alan Fern, David Maier, Prasad Tadepalli, and Hector Vergara. Their insightful comments helped this

  • Improving and Understanding Deep Models for Natural Language Comprehension

    Creator:
    Ghaeini, Reza
    Abstract:
    Natural Language Comprehension is a challenging domain of Natural Language Processing. To improve a model’s language comprehension/understanding, one approach would be to enrich the structure of the model to enhance its capability in learning the latent rules of the language. In this dissertation, we will first introduce several deep models...
    Resource Type:
    Dissertation
    Full Text:
    . Prasad Tadepalli, Dr. Liang Huang, Dr. David Hendrix, and Dr. Kipp Shearman, for all of their invaluable

  • Knowledge Base Completion Leveraging Natural Language Data

    Creator:
    Shahbazi, Hamed
    Abstract:
    Information about named entities (real-world objects) is usually harvested from different sources and organized as a multiple relational directed graph in Knowledge Bases (KBs). KBs play essential roles in many NLP modules including question answering, fact-checking, search engines, etc. KBs are big but still incomplete: relational information among entities is...
    Resource Type:
    Dissertation
    Full Text:
    , ...yn] of referent entities to maximize the following score: s(Y) = n∑ i=1 ψ(xi, yi) + n∑ i=1 n∑ j=1