The ultimate goals of this project are to 1) provide farmers with data-based advice on maintenance and enhancement of habitat for native wildlife based on what species are using the remnant/unfarmed patches on producers farms and to 2) provide background knowledge and data to enable development of a larger project...
Fidelity to breeding sites in colonial birds is an adaptive trait thought to have evolved to enhance reproductive success by reducing search time for breeding habitat, allowing earlier nest initiation, facilitating mate retention, and reducing uncertainty of predator presence and food availability. Studying a seabird that has evolved relatively low...
The distribution and range of lesser prairie-chicken (Tympanuchus pallidicinctus) has been reduced by >90% since European settlement of the Great Plains of North America. Currently, lesser prairie-chickens occupy 3 general vegetation communities: sand sagebrush (Artemisia filifolia), sand shinnery oak (Quercus havardii), and mixed-grass prairies juxtaposed with Conservation Reserve Program grasslands....
Mediterranean-climate regions (med-regions) are global hotspots of endemism 40 facing mounting environmental threats associated with human-related activities, including the ecological impacts associated with non-native species introductions. We review freshwater fish introductions across med-regions to evaluate the influences of non-native fishes on the biogeography of taxonomic and functional diversity. Our synthesis...
Deciding which textbook to assign to students is often a very difficult decision. A textbook should offer more than just a synthesis of information, it should inspire curiosity, cause one to reflect, and provide a framework for making decisions. Most reviews reflect a single opinion, sometimes based on personal preferences....
The undergradtuate research project was the completion, manipulation and assessment of a population model. The stage based population model assessed the late larval and juveniles stages of the hard shell clam Mercenaria mercenaria. There were seven class sizes input into the model starting with pediveligers and ending with juveniles at...
Light availability strongly influences stream primary production, water temperatures and resource availability at the base of stream food webs. In headwater streams, light is regulated primarily by the riparian forest, but few studies have evaluated the influence of riparian forest stand age and associated structural differences on light availability. In...
Differences in the chemical composition of calcified skeletal structures (e.g. shells, otoliths) have proven useful for reconstructing the environmental history of many marine species. However, the extent to which ambient environmental conditions can be inferred from the elemental signatures within the vertebrae of elasmobranchs (sharks, skates, rays) has not been...
The first objective of this study was to quantify the intensity of space use of 70 juvenile (12-26 months old) Steller sea lions (SSLs) from the western Distinct Population Segment (DPS) in the Kenai Fjord(KF)/Prince William Sound (PWS) region of Alaska as derived from externally attached ARGOS satellite transmitter tags....
Most parasites and their hosts live in a balance within their environment; however a disease outbreak can occur when either the parasite, host, or environment, are perturbed. Myxozoan parasites are associated with a wide variety of cultured and wild fish populations. Most myxozoans are relatively benign to their vertebrate host;...
Wild turkeys (Meleagris gallopavo) were first successfully introduced into Oregon and Washington in the 1960s; the population has grown in size and expanded in distribution to a point where it provides an important recreational hunting opportunity in both states that generates significant funds for habitat conservation and contributes financially to...
Studies of the effects of forest harvest on streams and fish have a long history in the Pacific Northwest. Results of this work have prompted development of new forest harvest practices that are more protective of these resources, but the effectiveness of these new practices has not been fully evaluated....
Juvenile Oncorhynchus mykiss migrate extensively in freshwater during fall. We used individual tagging to study the spatial origin, influences, and outcomes of fall migration on fish that emigrated from summer rearing tributaries during fall (early-emigrants) and those that did not (late-emigrants) in the South Fork John Day River, Oregon. Fall...
Identifying drivers of contact rates among individuals is critical to understanding disease dynamics and implementing targeted control measures. We studied the interaction patterns of 149 female elk (Cervus canadensis) distributed across five different regions of
western Wyoming over three years, defining a contact as an approach within one body length...
The physiological response of juvenile steelhead (Oncorhynchus mykiss) to prolonged heat stress was examined by exposing replicated groups of fish to 25 consecutive days at 15°C, 23°C, and 25°C followed by a 55 day recovery period at 15°C. We found that at temperatures ≥25°C, steelhead consumed significantly less food per...
Four streams-Clear Fork, Lost Creek, Camp Creek and Still Creek-in northwestern Oregon's Sandy River Basin were monitored for temperature, dissolved oxygen levels, and fecal bacterial concentrations in a multi-year analysis examining stream health for recreational users and anchor habitat for Pacific Salmon. Temperatures were recorded using micro -T temperature loggers...
Chinook salmon, Oncorhynchus tshawytscha, returning to the Yukon River basin and other large river systems in western Alaska have declined dramatically since the late 1990s. This continuing trend has raised concerns over the future status of the returns, and severely impacted commercial and subsistence fisheries within the drainage. Management is...
The endangered Hawaiian Duck (koloa maoli; Anas wyvilliana), a non-migratory and island-endemic species, experienced a significant population decline during the twentieth century due to factors such as habitat loss, overharvest, introduced mammalian predators, and hybridization with introduced feral Mallards (A. platyrhynchos). A key objective for Hawaiian Duck recovery is to...
Wetland restoration success in attaining wildlife conservation goals can be confounded by the presence of multiple biological invaders. Wetland management activities typically target invasive plants, but bottom-up responses of higher trophic levels in novel communities are difficult to predict. We surveyed plant and amphibian assemblages at 26 sites enrolled in...
Ungulate behavior has been studied extensively but direct observation of free-ranging animals over long periods of time and large geographic areas is often prohibitively difficult. Improved technology, such as GPS collars fitted with motion-sensitive activity monitors, provides researchers with a potential tool to remotely collect fine scale activity and location...
Differences in the chemical composition of calcified structures can be used to reveal natal origins, connectivity, metapopulation structure, and reconstruct the environmental history or movement patterns of many marine organisms. Sharks, skates, and rays (elasmobranchs) lack the calcified structures, known as otoliths, that are typically used for geochemical studies of...
We sought to characterize the distribution of juvenile walleye pollock Theragra chalcogramma in an area of intense predator-prey interactions and to describe habitat features that lead to their observed distributions. The distribution of juvenile walleye pollock around the Pribilof Islands in the southeastern Bering Sea in 2008 and 2009 was...
We investigated the movements and selection of settlement sites of translocated pygmy rabbits (Brachylagus idahoensis) in southeastern Oregon from June to December 2008. We captured, radio tagged, and translocated 59 pygmy rabbits across big sagebrush (Artemisia tridentata ssp.) habitat with 3 categories of landscape fragmentation. We used radio telemetry to...
Although climate acts as a fundamental constraint on the distribution of
organisms, understanding how this relationship between climate and distribution varies over a
species’ range is critical for addressing the potential impacts of accelerated climate change on
biodiversity. Bioclimatic niche models provide compelling evidence that many species will
experience range...
The Rusty Blackbird (Euphagus carolinus) has suffered significant population declines across its entire geographic range and the mechanisms associated with this decline are poorly understood. Although much of the Rusty Blackbird breeding habitat in Alaska has remained relatively unaltered by anthropogenic activities, this species continues to decline by an estimated...
Speckled dace (Rhinichthys osculus) is a small cyprinid that is geographically widespread throughout western North America, and the most frequently occurring sh in Oregon. Because of the genetic and morphological variation in this species across its range, it has been referred to as a "species complex" and no revision to...
Background: Scientists rarely reuse expert knowledge of phylogeny, in spite of years of effort to assemble a great
“Tree of Life” (ToL). A notable exception involves the use of Phylomatic, which provides tools to generate custom
phylogenies from a large, pre-computed, expert phylogeny of plant taxa. This suggests great potential...
The Pacific salmonid species Oncorhynchus mykiss is separated into a migratory form (steelhead trout) and a
non-migratory form (rainbow trout). A decrease in water temperature is likely a cue triggering downstream
behavior in the migratory form, and testosterone inhibits onset of this behavior. To elucidate differences in
sensitivity to water...
I conducted a study to identify potential spawning habitat for anadromous salmonids above a 60-year-old hydropower dam in the headwaters of the North Umpqua River in Oregon. Like many other historical salmonid-bearing rivers, little documentation exists for anadromous fish presence above potential natural obstacles upstream of Soda Springs Dam. My...
Dendritic ecological networks (DENs) are a unique form of ecological networks that exhibit a dendritic network topology (e.g. stream and cave networks or plant architecture). DENs have a dual spatial representation; as points within the network and as points in geographical space. Consequently, some analytical methods used to quantify relationships...
The northern spotted owl (Strix occidentalis caurina) is one of the most intensively studied raptors in the world; however, little is known about the impacts of wildfire on the subspecies and how they use recently burned areas. Three large-scale wildfires in southwest Oregon provided an opportunity to investigate the short-term...
Remote autonomous ecological acoustic recorders (EARs) were deployed in deep waters at five locations around the island of Kauai and one in waters off Ni'ihau in the main Hawaiian island chain. The EARs were moored to the bottom at depths between 400 and 800 m. The data acquisition sampling rate...
Characterizing the behaviors of sea turtles and identifying high-use areas as they
vary in time and space is important for conservation planning, particularly when turtles overlap
with fisheries that may unintentionally harm them. Between July 2006 and March 2010, 27 satellite
transmitters were deployed at sea on juvenile loggerheads Caretta...
There will be winners and losers as climate change alters the habitats of polar organisms. For an Adelie penguin (Pygoscelis adeliae) colony on Beaufort Island (Beaufort), part of a cluster of colonies in the southern Ross Sea, we report a recent population increase in response to increased nesting habitat as...
Rotary screw traps are used throughout the West Coast of North America to capture emigrating juvenile salmonids. Calibrating the capture efficiency of each trap is essential for valid estimates of fish passage. We released Passive Integrated Transponder (PIT) tagged Oncorhynchus mykiss upstream of a rotary screw trap in the South...
We evaluated the relative importance of "bottom-up" (production-limited) and "top-down" (predator-mediated) processes during early marine residence in a population of Chinook salmon (Oncorhynchus tshawytscha) from the upper Columbia River, USA. We examined length, mass, and condition index of age-0 juveniles collected in the ocean during June and September across 11...
Western Atlantic synodontid species were studied as part of an ongoing effort to reanalyze Caribbean shorefish diversity. A neighbor-joining tree constructed from cytochrome c oxidase I (COI) data revealed 2 highly divergent genetic lineages within both Synodus intermedius (Agassiz, 1829) (Sand Diver) and S. foetens (Linnaeus, 1766) (Inshore Lizardfish). A...
The fitness of female Pacific salmon (Oncorhynchus spp.) with respect to breeding behavior can be partitioned into at least four components: survival to reproduction, competition for breeding sites, success of egg incubation, and suitability of the local environment near breeding sites for early rearing of juveniles. Accordingly, breeding sites should...
Range, areas of concentrated activity, and dispersal characteristics for juvenile Steller sea lions Eumetopias jubatus in the endangered western population (west of 144° W in the Gulf of Alaska) are poorly understood. This study quantified space use by analyzing post-release telemetric tracking data from satellite transmitters externally attached to n...
Transmission dynamics of the actinospore stage of Ceratomyxa shasta to the salmonid host were investigated under field and laboratory conditions. The number of parasites transmitted and the transmission rate were compared between 2 different exposure durations and also among different water velocities, by means of field exposures. Under laboratory conditions,...
Steelhead and rainbow trout are common names for marine-migratory (anadromous) and freshwater-resident forms of Oncorhynchus mykiss, a partially migratory salmonid fish. Anadromous and resident forms are sympatric and can produce offspring with a life history different from their own (i.e., steelhead parents can produce rainbow trout offspring and vice versa)....
There are three recognized species of Siphateles from the Great Basin; S. alvordensis, S. boraxobius and the tui chub, S. bicolor. One species, S. boraxobius, is endangered and one population of tui chub at Hutton Spring is threatened. Despite several morphological and molecular studies, the taxonomy and relationships of tui...
The mechanisms of mortality during critical life stages of fish are not well-understood and, for many species, it is not clear if the mechanisms are similar for naturally and artificially propagated individuals. For Chinook salmon (Oncorhynchus tshawytscha), natural fish potentially face negative interactions, such as competition, and survival disadvantages, such...
Aquatic ecosystems continue to be increasingly affected by climate warming. For salmonids in the Pacific Northwest of North America, increasing temperatures pose tighter thermal constraints on their habitat use as well as aspects of their individual performance, such as disease resistance. This thesis examines the effect of temperature on the...
Patterns of nest attendance behavior by breeding birds represent a parent-offspring trade-off in which adults balance self-maintenance with parental care decisions.
Incubation, in particular, is of interest because adults must provide an environment
suitable for embryonic development through nest-building and contact-incubation.
We evaluated how adult incubation constancy and nest visitation...
In the Klamath province of southwestern Oregon, Northern Spotted Owls (Strix occidentalis caurina) occur in complex, productive forests that historically supported frequent fires of variable severity. However, little is known about the relationships between Spotted Owl survival and home-range size and the characteristics of fire-prone, mixed-conifer forests of the Klamath...
Debris flows, common disturbances in many mountainous areas, initially scour or bury stream habitats; however, debris flows deliver vast amounts of wood, boulders, and gravel that may ultimately form complex stream habitat to potentially support a diverse salmonid assemblage. The materials deposited by debris flows would otherwise be inaccessible to...
Marine protected areas (MPAs) are increasingly being used as a conservation tool for highly mobile marine vertebrates and the focus is typically on protecting breeding areas where individuals are aggregated seasonally. Yet movements during the non-breeding season can overlap with threats that may be equally as important to population dynamics....
Coastal wetlands can have exceptionally large carbon (C) stocks and their protection and restoration would constitute an effective mitigation strategy to climate change. Inclusion of coastal ecosystems in mitigation strategies requires quantification of carbon stocks in order to calculate emissions or sequestration through time. In this study, we quantified the...
One of the biggest challenges when conducting a national-scale assessment of lakes, such as the 2007 US National Lake Assessment (NLA), is finding enough reference lakes to set appropriate expectations for the assessed sites. In the NLA, a random design was used to select lakes for sampling to make unbiased...
We examined the distribution of Umpqua Chub Oregonichthys kalawatseti, an endemic, vulnerable minnow in western Oregon, and whether six ecological populations (based on distribution patterns) had sufficient genetic cohesion to be considered evolutionary populations. We also evaluated the influence of Holocene geological events and recent nonnative predator introductions on the...
Most studies dealing with the use of ecological indicators and other applied ecological research rely on some definition or concept of what constitutes least-, intermediate- and most-disturbed condition. Currently, most rigorous methodologies designed to define those conditions are suited to large spatial extents (nations, ecoregions) and many sites (hundreds to...
North American freshwater mussels have been subjected to multiple stressors in recent decades that have contributed to declines in the status and distribution of many species. However, considerable uncertainty exists regarding the relative influence of these factors on observed population declines. 2. We used an occupancy modelling approach to quantify...
Species composition within ecological assemblages can drive disease dynamics including pathogen invasion, spread, and persistence. In multi-host pathogen systems, interspecific variation in responses to infection creates important context dependency when predicting the outcome of disease. Here, we examine the responses of three sympatric host species to a single fungal pathogen,...
Determining the mechanisms responsible for the success of invasive species is critical for
developing effective management strategies. Artificially draining managed wetlands to maintain natural
ephemeral conditions is a common practice in the Pacific Northwest and is assumed to kill invasive American
bullfrog (Lithobates catesbeianus) larvae, which typically overwinter in permanent...
Spatial coherence between predators and prey has rarely been observed in pelagic marine ecosystems. We used measures of the environment, prey abundance, prey quality, and prey distribution to explain the observed distributions of three co-occurring predator species breeding on islands in the southeastern Bering Sea: black-legged kittiwakes (Rissa tridactyla), thick-billed...
We quantified the patterns in macroinvertebrate assemblages and their
associated environmental gradients from 457 least-disturbed wadeable
stream sites across the 48 contiguous United States sampled as part
of US EPA’s National Wadeable Stream Assessment. The majority of the
variation in assemblage composition at the finest taxonomic resolution
was related to...
Despite concern expressed two decades ago, there has been little recent discussion about continuing declines of migrant bird populations. Monitoring efforts have been focused almost exclusively on the breeding grounds. We describe the long-term decline of a winter-resident bird population in Guánica Commonwealth Forest, Puerto Rico, one of the last...
Large population sizes and global distributions generally associate with high mitochondrial DNA control region (CR) diversity. The sperm whale (Physeter macrocephalus) is an exception, showing low CR diversity relative to other cetaceans; however, diversity levels throughout the remainder of the sperm whale mitogenome are unknown. We sequenced 20 mitogenomes from...
In the final phase of their spawning migration, Pacific salmon use chemical cues to identify their home river, but how they navigate from the open ocean to the correct coastal area has remained enigmatic [1]. To test the hypothesis that salmon imprint on the magnetic field that exists where they...