Birds perform valuable ecological functions and are useful environmental indicators. Avian distributions and diversity are predicted to change over the next 50 years. Little information exists on the role of local and regional conditions in fluctuations of avian communities over time. Historic datasets present a legacy of information that helps...
The Cackling goose (Branta hutchinsii minima) population has increased from a low of 20,000 in 1984 to the current population of 220,000-300,000 (Stehn 2012, Sanders 2013). As the Cackling goose population began to recover in the late 1990s, the majority of the population relocated from wintering in California to the...
The mechanisms of mortality during critical life stages of fish are not well-understood and, for many species, it is not clear if the mechanisms are similar for naturally and artificially propagated individuals. For Chinook salmon (Oncorhynchus tshawytscha), natural fish potentially face negative interactions, such as competition, and survival disadvantages, such...
Many factors should be considered before selecting a graduate program to attend. Graduate education can be expensive, so financial and health care benefits offered by a department or college should be considered when selecting a graduate program. A majority of fisheries graduate students recently surveyed believed that financial aspects should...
We used radio and acoustic telemetry to study the behavior and survival of wild steelhead trout (Oncorhynchus mykiss) and hatchery coho salmon (Oncorhynchus kisutch) and steelhead outmigrants in a small coastal estuary during two years. Survival was generally low for hatchery fish but more variable, both within and between years,...
Understanding food webs is fundamental in conserving endangered species and maintaining healthy ecosystem function, particularly in desert spring systems. We identified dominant energy sources in the Muddy River Warm Springs area, Clark County, NV using carbon and nitrogen natural abundance stable isotope analyses. We examined isotopic signatures of specific macroinvertebrate...
Depleted species of rockfish (Sebastes spp.) from the Northeast Pacific experience high discard mortality due to "barotrauma," induced from the rapid change in pressure during capture. Research suggests rockfish have the potential to survive barotrauma if immediately recompressed, but the potential for long-term recovery is unknown. In this project, we...
Four streams-Clear Fork, Lost Creek, Camp Creek and Still Creek-in northwestern Oregon's Sandy River Basin were monitored for temperature, dissolved oxygen levels, and fecal bacterial concentrations in a multi-year analysis examining stream health for recreational users and anchor habitat for Pacific Salmon. Temperatures were recorded using micro -T temperature loggers...
Research on cetacean foraging ecology is central to our understanding of their spatial and behavioral ecology. Yet, functional mechanisms by which cetaceans detect prey across different scales remain unclear. Here, I postulate that cetaceans utilize a scale-dependent, multimodal sensory system to assess and increase prey encounters. I review the literature...
Twentieth century commercial whaling drastically reduced the abundance of great whale populations in the Southern Ocean. Exploitation began on the south Atlantic island of South Georgia, where catch records account for over 175,000 whales killed. Modern whaling within the Southern Ocean depleted populations rapidly, and by 1966, hunting blue whales...
Harbor porpoises (Phocoena phocoena) are commonly observed in Oregon's nearshore marine environment yet knowledge of their ecosystem use and behavior remains limited, generating concerns for potential impacts on this species from future coastal development. Passive acoustic monitoring was used to investigate spatial and temporal variations in the presence and foraging...
The dynamic nature of most environments forces many animals to move to meet their fundamental needs. This is especially true in aquatic environments where shifts in spatial ecology (which are a result of movements) are among the first adaptive responses of animals to changes in ecosystems. Changes in the movement...
Despite being a highly charismatic and frequently exhibited organism,
Giant Pacific Octopus (Enteroctopus dofleini) population dynamics
are poorly understood. Basic monitoring data for this species is
limited to bycatch and stomach contents of other fisheries species. An
essential step to a better estimation of population size and
productivity is to...
Streams that dry during part of the year are common throughout the world, yet studies of the macroinvertebrate assemblages in these types of streams are rare compared to those in permanent streams; and studies that assess the effects of agriculture on temporary stream invertebrates are even rarer. We studied macroinvertebrate...
The critically endangered Maui's dolphin (Cephalorhynchus hectori maui) and the endangered Hector's dolphin (C. h. hectori) are endemic to the coastal waters of New Zealand, where their primary threat is fisheries-related mortality. The Maui's dolphin is among the most critically endangered cetaceans in the world, with its remnant population primarily...
Background. Ampelisca eschrichtii Krøyer, 1842 of the Sakhalin Shelf of the Okhotsk Sea, Far Eastern Russia, comprise the highest known biomass concentration of any amphipod population in the world and are a critically important prey source for western gray whales. Growth and reproduction in this population has not been apparent...
Forecasts of the impacts of climate change have traditionally focused on individual species and their phenotypes, phenology, or distribution. However, shifts in species distributions and the resulting reorganization of community composition represent an important violation to the assumption of species acting in isolation. Whereas species may respond individualistically to climate...
One of the biggest challenges when conducting a national-scale assessment of lakes, such as the 2007 US National Lake Assessment (NLA), is finding enough reference lakes to set appropriate expectations for the assessed sites. In the NLA, a random design was used to select lakes for sampling to make unbiased...
Collaborative decision-making is often promoted as a means to achieve socially acceptable and enduring solutions to natural resource management issues, and one that holds promise for resolving “wicked” problems. However, success rates for implementation of collaborative recommendations are unknown. This paper explores challenges to collaborative salmon fishery management in Prince...
Numerous populations of salmon and trout undergo extensive migrations, migrating from freshwater to the sea and throughout ocean basins. Years later they return to their natal streams with remarkable accuracy and precision. The outward migration is accomplished without the benefit of following experienced migrants or prior individual experience. Evidence suggests...
Two indigenous species of burrowing shrimp inhabit and often dominate the intertidal zone of estuaries along the US West Coast, the ghost shrimp, Neotrypaea californiensis, and the blue mud shrimp, Upogebia pugettensis. Both species are considered ecosystem engineers and play a role in maintaining estuarine health and ecosystem function. They...
Species conservation depends on robust population assessment. Data on population abundance, distribution, and connectivity are critical for effective management, especially as baseline information for newly documented populations. I describe a pygmy blue whale (Balaenoptera musculus brevicauda) population in New Zealand waters with year-round presence that overlaps with industrial activities. This...
The goal of this project was to estimate the total annual cost of salmon recovery efforts throughout the Columbia River Basin from all stakeholders, including direct and indirect costs. How much is spent on salmon recovery efforts each year in the Columbia River Basin? Depending on who you ask, you...
Olive ridley sea turtles (Lepidochelys olivacea) present an interesting case study of the conservation of wildlife species that aggregate in high densities and have served as resources for human consumption. Ridleys exhibit synchronized mass-nesting behavior,
during events called "arribadas," where thousands of females lay eggs together in a small area...
Headwater riparian areas occupy a large proportion of the land base in Pacific Northwest forests, and thus are ecologically and economically important. Although a primary goal of management along small headwater streams is the protection of aquatic resources, streamside habitat also is important for many terrestrial wildlife species. However, mechanisms...
The North Pacific humpback whale (Megaptera novaeangliae) population has been increasing at an average annual rate of ~6% since the early 1990s. In northern Southeast Alaska alone, there are now more whales than estimated for the entire North Pacific several decades ago. An understanding of how this growing population is...
The Wetland Reserve Program (WRP) is one conservation tool that mitigates national wetland loss and a primary goal for the program includes optimizing wildlife habitat by restoring wetland functions and values. Few studies have evaluated the WRP, which limits our understanding of its impact on wildlife populations. I assessed the...
Mule deer (Odocoileus hemionus) populations in south-central Oregon are near their lowest levels since census efforts began in 1961. I investigated fawn survival, cause-specific mortality, and factors contributing to mortality from 2010 – 2012 to identify potential causes for the decline. I also explored pre-parturition and parturition site characteristics.
I...
Ecotourism is a movement that seeks to sustain local communities by uniting conservation, travel, and education. To minimize effects on animal behavior, ecotourism operations must be carefully managed. Local management efforts that can be tailored to the specific area and animals may be more successful than broad‐scale efforts that may...
Periodic weighing of seabird chicks is labour-intensive and repeated handling can cause high levels of disturbance to chicks. Although automatic weighing systems using a fibreglass nest have been designed for albatross species with a pedestal nest made of mud, this approach is inappropriate for great albatross species (genus Diomedea) whose...
The rapid disruption of tropical forests probably imperils global biodiversity more than any other contemporary phenomenon¹⁻³. With deforestation advancing quickly, protected areas are increasingly becoming final refuges for threatened species and natural ecosystem processes. However, many protected areas in the tropics are themselves vulnerable to human encroachment and other environmental...
Vibrio coralliilyticus (Vcor) is a bacterial pathogen that is well adapted to shellfish hatcheries and is very pathogenic to the larvae of the Pacific oyster Crassostrea gigas. Vcor has been associated with several large scale larval mortality events in the Pacific Northwest that interrupt the supply of seed oysters available...
The detection of white-nose syndrome (WNS) in King County, WA in 2016 prompted the National Park Service to mobilize region-wide bat monitoring and disease surveillance. One of the goals of the Pacific West Region WNS response plan was to implement acoustic monitoring to determine the distribution of bat species and...
Commercial whaling during the 20th century drastically reduced many populations of great whales in the Southern Hemisphere. The Antarctic blue whale, for example, is estimated to have been reduced to less than 0.1% of its original abundance based on catch records and population dynamic models. Despite this population bottleneck, several...
The California Current Ecosystem (CCE) is a dynamic marine ecosystem from which many socioeconomically important fisheries species are harvested. In this thesis, a genotyping-by-sequencing (GBS) approach was used to examine genomic variation in an early life stage of the Dungeness crab (Cancer magister), which constitutes the most valuable single-species commercial...
I evaluated hypotheses related to growth as a driver of depth use and diel vertical migration by bull trout (Salvelinus confluentus) in a thermally stratified reservoir. I applied a bioenergetic model to evaluate growth of bull trout in relation to potential patterns of diel depth use by bull trout in...
This dissertation focuses on the predator-prey relationship between two species of avian predators, Caspian terns (Hydroprogne caspia) and double-crested cormorants (Phalacrocorax auritus), and one of their important prey types, juvenile salmonids (Oncorhynchus spp.), in the Columbia River estuary of Oregon and Washington states during the period 1998 – 2007. I...
Steelhead and rainbow trout are common names for marine-migratory (anadromous) and freshwater-resident forms of Oncorhynchus mykiss, a partially migratory salmonid fish. Anadromous and resident forms are sympatric and can produce offspring with a life history different from their own (i.e., steelhead parents can produce rainbow trout offspring and vice versa)....
Humans have drastically altered the physical habitat and food web structure of stream ecosystems. Two major impacts humans have had on Pacific Northwest streams are modification of streamside forests (as a result of agriculture, land development, and timber harvest), and declines in the return of wild anadromous salmon to headwater...
Availability of suitable nesting habitat that is free of nest predators and provides access to adequate prey resources within commuting distance is a major factor limiting seabird populations. Caspian terns (Hydroprogne caspia) in western North America have shifted their breeding habitat from naturally occurring habitats in interior wetlands, lakes, and...
The Kittlitz's murrelet (Brachyramphus brevirostris) is a rare member of the seabird family Alcidae that breeds in coastal areas of Alaska and Beringian Russia. The species belongs to the genus Brachyramphus, an unusual seabird taxon in which all three extant species nest non-colonially, situating their nests up to 75 km...
The fitness of female Pacific salmon (Oncorhynchus spp.) with respect to breeding behavior can be partitioned into at least four components: survival to reproduction, competition for breeding sites, success of egg incubation, and suitability of the local environment near breeding sites for early rearing of juveniles. Accordingly, breeding sites should...
Prairie-oak ecosystems in the Willamette Valley, Oregon have experienced habitat loss and degradation; most of these ecosystems are fragmented into smaller patches. Prairie-oak butterfly species, in the Willamette Valley, have decreased dramatically due to loss or degradation of habitat. More research is needed on sustaining the populations of butterflies in...
Reintroduction programs are increasingly being used to save animals from extinction and aid in their recovery. The California Condor (Gymnogyps californianus), one of the most endangered birds in the world, is a remarkable example of how reintroduction programs can help rapidly increase a species' population numbers and range following a...
The Mahakam Delta which was once among the largest mangrove forests in Indonesia, has been subjected to dramatic changes in structure and function due to massive shifts from mangrove forest to shrimp ponds and oil and gas development. To understand the impacts of mangrove loss to the greenhouse gas (GHG)...
This study focuses in providing the knowledge on carbon (C) stocks, emission and ecosystem productivity related to land use/land cover change in tropical peatlands. The field research activities were conducted for about 17 months between August 2013 to December 2015, at Pematang Gadung peat dome (peat depth up to 10.5...
This dissertation addresses gaps of knowledge associated with how ecosystem carbon stocks and greenhouse gas emissions are affected by land use land cover change in tropical peatlands. This was the first study that paired peat swamp forests with oil palm plantations and analyzed site scale variation on greenhouse gas emissions....
Coastal wetlands can have exceptionally large carbon (C) stocks and their protection and restoration would constitute an effective mitigation strategy to climate change. Inclusion of coastal ecosystems in mitigation strategies requires quantification of carbon stocks in order to calculate emissions or sequestration through time. In this study, we quantified the...