Index Catalog // ScholarsArchive@OSU

Colony Connectivity of Pacific Coast Double-Crested Cormorants Based on Post-Breeding Dispersal From the Region’s Largest Colony

Creator:: Courtot, Karen N., Roby, Daniel D., Adkins, Jessica Y., Lyons, Donald E., King, D. Tommy, and Larsen, R. Scott
Abstract:: To reduce conflicts with fish resources, other colonial waterbirds, and damage to habitats, double-crested cormorants (Phalacrocorax auritus) are currently controlled (lethally and non-lethally) throughout much of their range. Concerns are growing over the Pacific Coast's largest double-crested cormorant colony at East Sand Island (ESI), Oregon near the mouth of the...
Resource Type:: Article
Full Text:: JESSICA Y. ADKINS, Oregon Cooperative Fish and Wildlife Research Unit, Oregon State University, 104 Nash

Trophically transmitted parasites as ecosystem indicators : relationships among parasite community structure, juvenile salmon diet composition, and ocean conditions

Creator:: Losee, James P.
Abstract:: Recent research conducted throughout the Northern California Current (NCC) on the ecology of Pacific salmon (Oncorhynchus spp.) indicates that variable ocean conditions affect the community composition of zooplankton in the nearshore environment which, in turn, can affect the quality of prey for fish, sea birds and mammals. Interannual variability in...
Resource Type:: Masters Thesis
Full Text:: . Abstract approved:_______________________________________________________________ Jessica A. Miller

A comparison of early marine residence in hatchery and natural Chinook salmon (Oncorhynchus tshawytscha)

Creator:: Claiborne, Andrew M.
Abstract:: The mechanisms of mortality during critical life stages of fish are not well-understood and, for many species, it is not clear if the mechanisms are similar for naturally and artificially propagated individuals. For Chinook salmon (Oncorhynchus tshawytscha), natural fish potentially face negative interactions, such as competition, and survival disadvantages, such...
Resource Type:: Masters Thesis
Full Text:: and Natural Chinook Salmon (Oncorhynchus tshawytscha) Abstract approved: Jessica A

Sandy beach surf zones : what is their role in the early life history of Chinook salmon (Oncorhynchus tshawytscha)?

Creator:: Marin Jarrin, Jose R.
Abstract:: Early life stages of many marine and diadromous fish species use sandy beach surf zones, which occur along >50% of the world's marine coastlines. This extensive habitat can provide juvenile fishes with an abundant supply of potential prey and the ability to hide from predators in its shallow turbid waters....
Resource Type:: Dissertation
Full Text:: tshawytscha)? Abstract approved: ___________________________________________________ Jessica A

Evaluation of Pacific Lamprey Entosphenus Tridentatus Anatomical Structures as Records of Age and Isotope Histories

Creator:: Pelekai, Keala N.
Abstract:: The anadromous Pacific Lamprey (Entosphenus tridentatus) is a biologically and culturally important species native to the North Pacific Ocean and its adjacent freshwater tributaries. Pacific Lamprey have experienced declines in abundance and distribution throughout their native range, highlighting a need for further research on the species to better inform conservation...
Resource Type:: Masters Thesis
Full Text:: Histories Abstract approved: ______________________________________________________ Jessica A

Year-class regulation of mid-upper Columbia River spring Chinook salmon Oncorhynchus tshawytscha : the role of juvenile size, growth, and migratory behavior

Creator:: Tomaro, Londi M.
Abstract:: Early ocean residence is assumed to be a critical period for juvenile Pacific salmon Oncorhynchus spp. However, the specific mechanisms influencing growth and survival in the ocean have not been identified for most populations. Therefore, three hypotheses regarding the relationship between early marine residence and subsequent survival of mid-upper Columbia...
Resource Type:: Masters Thesis
Full Text:: : _____________________________________________________________________ Jessica A. Miller Early ocean residence is assumed to be a critical period for juvenile

Pre- and Post-settlement Processes of Northern Rock Sole (Lepidopsetta polyxystra) in Relation to Interannual Variability in Temperature and Productivity in the Gulf of Alaska

Creator:: Fedewa, Erin J.
Abstract:: Understanding the effects of climate variability on growth dynamics and timing of early life history events in marine fishes can provide insights into survival, recruitment and productivity. Field collections (2005, 2007, 2009-2011) were combined with otolith microstructural analysis to examine interannual variation in larval and juvenile growth rates, size at...
Resource Type:: Masters Thesis
Full Text:: Jessica A. Miller Understanding the effects of climate variability on growth dynamics and timing of

Feeding Ecology and Growth of Juvenile Chinook Salmon (Oncorhynchus tshawytscha) During Early Marine Residence

Creator:: Litz, Marisa Norma Chantal
Abstract:: The early marine phase following freshwater emigration has been identified as a critical period in salmonid (Oncorhynchus spp.) life history, characterized by high but variable mortality. Consistent with the “growth-mortality” and “bigger-is-better” hypotheses, at least some of the mortality during the critical period appears to be size-dependent – with smaller...
Resource Type:: Dissertation
Full Text:: : ______________________________________________________ Jessica A. Miller The early marine phase following freshwater emigration has been

Feeding Ecology and Food Web Linkages of Yearling Chinook Salmon (Oncorhynchus tshawytscha) Migrating Through the Lower Columbia River and Estuary

Creator:: Munguia, Angelica
Abstract:: The Columbia River Basin historically supported abundant populations of Pacific salmon (Oncorhynchus spp.) but, largely due to anthropogenic influence, many populations are now listed as threatened or endangered under the U.S. Endangered Species Act. Habitat restoration efforts have been a critical component of salmon recovery plans. However, although the importance...
Resource Type:: Masters Thesis
Full Text:: : ______________________________________________________________ Jessica A. Miller The Columbia River Basin historically supported abundant

The use of wax spray beads (WSB) for iodine enrichment of Artemia sp. for use as a live food for zebrafish (Danio rerio) larvae

Creator:: Hawkyard, Donald Matthew
Abstract:: Dietary iodine may play an important role in the nutritional health of freshwater fish larvae. Artemia, commonly used for the culture of larval zebrafish (Danio rerio), contain low concentrations of iodine when compared with wild zooplankton. Water-soluble micronutrients, such as iodine, are difficult to deliver to Artemia due to rapid...
Resource Type:: Masters Thesis
Full Text:: (KI+Y WSB) for enrichment of Artemia with iodine; 2) evaluate the use of Y2O3 as an inert marker in

Effects of Elevated CO₂ on Speckled Sanddab (Citharichthys stigmaeus) Behavior

Creator:: Andrade, Jessica F.
Abstract:: The direct and indirect effects of ocean acidification (OA) are a growing concern, particularly in areas already experiencing elevated levels of oceanic CO₂. Studies with marine fishes suggest that elevated CO₂ levels may affect behavior by interfering with an important brain neurotransmitter. Studies examining the effects of OA fish behavior...
Resource Type:: Masters Thesis
Full Text:: AN ABSTRACT OF THE THESIS OF Jessica

Population Genetics of American Pika (Ochotona princeps) : Investigating Gene Flow and Genetic Diversity Across Multiple, Complex Landscapes

Creator:: Castillo, Jessica A.
Abstract:: American pikas (Ochotona princeps) are considered an indicator species of climate change. Adaptations for cold climates and active winters make pikas particularly sensitive to increasing temperatures. This, combined with evidence that multiple historically occupied populations have been extirpated within the past century, contributed to American pikas becoming a focal species...
Resource Type:: Dissertation
Full Text:: OF THE DISSERTATION OF Jessica A. Castillo for the degree of Doctor of Philosophy in Wildlife

Patch dynamics of desert fishes in the arid wetlands of western Utah

Creator:: Sáenz, Jessica
Abstract:: The conservation of declining desert fish species requires the identification of relations between fish population dynamics and their environments. Dynamic occupancy modeling, an approach that requires less information than traditional mark-recapture studies, may help identify important factors affecting population processes and aid desert fish conservation and restoration efforts. I used...
Resource Type:: Masters Thesis
Full Text:: Western Utah AN ABSTRACT OF THE THESIS OF Jessica Sáenz for the degree of

Natal source contributions of Pacific cod (Gadus macrocephalus) recruits in the southeastern Bering Sea

Creator:: DiMaria, Ruth A.
Abstract:: Effective and sustainable fisheries management not only depends on identifying and defining stocks (fundamental unit of management), but also on having knowledge of factors influencing the abundance, distribution and connectivity of stocks. Population structure of Pacific cod (Gadus macrocephalus) in the southeastern Bering Sea (EBS) remains unresolved although genetic data...
Resource Type:: Masters Thesis
Full Text:: Bering Sea. Abstract approved: Jessica A. Miller Effective and sustainable fisheries

Stock Synthesis Assessments of Spatially Structured Fish Populations with an Environmental Driver on Recruitment Distribution : A Simulation Study and Discussion

Creator:: Denson, LaTreese S.
Abstract:: Stock assessments use statistical models and empirical data to re-create the population dynamics of a stock in order to provide estimates of biomass and fishing mortality rates to inform fisheries management. Fish stocks are not uniformly distributed across spatial regions, but stock assessments typically ignore stock spatial structure, for the...
Resource Type:: Masters Thesis
Full Text:: good scientist with no shortcuts. I also would like to acknowledge my major co-advisor Dr. Jessica

Ecology of the northern subpopulation of northern anchovy (Engraulis mordax) in the California Current large marine ecosystem

Creator:: Litz, Marisa N. C.
Abstract:: Northern anchovy (Engraulis mordax) are a dominant forage fish in the California Current large marine ecosystem (CCLME). However, little is known about northern anchovy abundance, distribution, age structure, or population fluctuations relative to ocean conditions in the eastern boundary upwelling system off the U.S. West Coast. This thesis includes three...
Resource Type:: Masters Thesis
Full Text:: . Lyons, D. P. Craig, J. Y. Adkins, A. M. Myers, and R. M. Suryan. 2002. Effects of colony relocation on

Contribution of subyearling estuarine migrant coho salmon (Oncorhynchus kisutch) to spawning populations on the southern Oregon coast

Creator:: Nordholm, Katherine E.
Abstract:: The typical coho salmon life history has been characterized by juvenile fish that spend their entire first year in freshwater habitats before migrating into estuaries as smolts. However, reports of early migrating coho fry (age 0), including migration downstream to estuarine habitats, date back to the 1960s. Until a few...
Resource Type:: Masters Thesis
Full Text:: simultaneously a student at Oregon State University. My committee members, Phil Roni and Jessica Miller

Young-of-the-year rockfish (Sebastes spp.) settlement dynamics in Oregon estuaries

Creator:: Dauble, Alison D.
Abstract:: In the Pacific Northwest, several species of rockfishes (Sebastes spp.) are under extreme conservation measures due to low population levels. Although currently at healthy population levels, one species of interest is the black rockfish (S. melanops), which has been shown to utilize estuarine habitat during its early life history stages....
Resource Type:: Masters Thesis
Full Text:: ;#19#:1@L9/0<4## # # # # # # # # # # Y#(1AK:/><;#7K#!./012#34#3567.8# B628#CD#EFGF

Sequential isotopic analysis to characterize ontogenetic shifts and growth dynamics of loggerhead sea turtles (Caretta caretta)

Creator:: Ramirez, Matthew D.
Abstract:: Ontogenetic niche theory predicts that as organisms grow they make size-specific changes in habitat use and diet to optimize growth and survival. A variety of factors contribute to growth and survival in different habitats, ultimately leading to variation in life history that can affect population dynamics. An understanding of the...
Resource Type:: Masters Thesis
Full Text:: like to recognize and thank my committee members, Jessica Miller, Melissa Snover, and Selina

Juvenile Rockfish (Sebastes spp.) Community Composition and Habitat use of Yaquina Bay, Oregon

Creator:: Lindsley, Amy J.
Abstract:: Estuaries, which provide viable habitat for a plethora of fish and invertebrate species, are being increasingly impacted by anthropogenic and natural forces. Estuaries are important nursery habitat for young-of-the-year (YOY) Pacific rockfish (Sebastes spp.). Yaquina Bay, a marine-dominated estuary on the central Oregon Coast, served as a study site for...
Resource Type:: Masters Thesis
Full Text:: . Thank you to my committee Jessica Miller and Ric Brodeur for their guidance, edits, and time. To all

Enrichment of Live Prey with Microparticles for the Enhanced Delivery of Water-soluble Nutrients to Marine Fish Larvae

Creator:: Hawkyard, Donald Matthew
Abstract:: In the wild, marine fish larvae feed on copepods and other planktonic organisms. Copepods are often considered the "gold standard" for meeting the nutritional needs of cultured marine fish larvae; however, in captivity, marine fish larvae are generally fed cultured live prey, i.e. rotifers (Brachionus plicatilis) and/or Artemia sp., until...
Resource Type:: Dissertation
Full Text:: addition, I appreciate the time and guidance given by my committee members, Dr. Jessica Miller, Dr.Gita

Description and analysis of dietary preference of lingcod in the nearshore zone, Oregon

Creator:: Tinus, Craig A.
Abstract:: The lingcod (Ophiodon elongatus) is an important groundfish species in both recreational and commercial fisheries of the Northeastern Pacific. It is a large, fast-growing, generalist predator of invertebrates and fishes. In response to concerns that lingcod may limit populations of rockfishes (Sebastes spp.), I compared the diets of 375 adult...
Resource Type:: Dissertation
Full Text:: , Mark Hixon, David Noakes, and Jessica Miller served as an encouraging and helpful committee. Glenn

Vertebral elemental markers in elasmobranchs : potential for reconstructing environmental history and population structure

Creator:: Smith, Wade D.
Abstract:: Differences in the chemical composition of calcified structures can be used to reveal natal origins, connectivity, metapopulation structure, and reconstruct the environmental history or movement patterns of many marine organisms. Sharks, skates, and rays (elasmobranchs) lack the calcified structures, known as otoliths, that are typically used for geochemical studies of...
Resource Type:: Dissertation
Full Text:: . Selina S. Heppell, Jessica A. Miller, Zanna Chase, Bruce McCune, and Christian Langpap - for their

Function of Oregon Estuaries to Juvenile Fishes, with Focus on Juvenile Rockfishes (Sebastes spp.) in Yaquina Bay, Oregon

Creator:: Schwartzkopf, Brittany D.
Abstract:: The role that anthropogenic and natural habitats in estuaries play in long-term population trends for Oregon’s nearshore marine fishes is poorly understood, in part due to limited temporal sampling. One important nearshore marine group is northeastern Pacific rockfishes (Sebastes spp.), which are highly diverse, with around 96 documented species, and...
Resource Type:: Dissertation
Full Text:: made me a better scientist and person and I am forever thankful. To my committee members Jessica

Big Fishery, Big Data, and Little Crabs: Using a Genomic Approach to Examine Larval Recruitment Patterns of Dungeness Crab (Cancer magister) in the California Current Ecosystem

Creator:: Lee, Elizabeth M. J.
Abstract:: The California Current Ecosystem (CCE) is a dynamic marine ecosystem from which many socioeconomically important fisheries species are harvested. In this thesis, a genotyping-by-sequencing (GBS) approach was used to examine genomic variation in an early life stage of the Dungeness crab (Cancer magister), which constitutes the most valuable single-species commercial...
Resource Type:: Masters Thesis
Full Text:: that loved Big Data. I would also like to thank my committee members, Dr. Jessica Miller, Dr. David

Disentangling bottom-up and top-down effects on survival during early ocean residence in a population of Chinook salmon (Oncorhynchus tshawytscha)

Creator:: Miller, Jessica A., Teel, David J., Baptista, Antonio, and Morgan, Cheryl A.
Abstract:: We evaluated the relative importance of "bottom-up" (production-limited) and "top-down" (predator-mediated) processes during early marine residence in a population of Chinook salmon (Oncorhynchus tshawytscha) from the upper Columbia River, USA. We examined length, mass, and condition index of age-0 juveniles collected in the ocean during June and September across 11...
Resource Type:: Article
Full Text:: salmon (Oncorhynchus tshawytscha) Jessica A. Miller, David J. Teel, Antonio Baptista, and Cheryl A

Elemental Markers in Elasmobranchs: Effects of Environmental History and Growth on Vertebral Chemistry

Creator:: Smith, Wade D., Miller, Jessica A., and Heppell, Selina S.
Abstract:: Differences in the chemical composition of calcified skeletal structures (e.g. shells, otoliths) have proven useful for reconstructing the environmental history of many marine species. However, the extent to which ambient environmental conditions can be inferred from the elemental signatures within the vertebrae of elasmobranchs (sharks, skates, rays) has not been...
Resource Type:: Article
Full Text:: History and Growth on Vertebral Chemistry Wade D. Smith1*, Jessica A. Miller2, Selina S. Heppell3 1

Distributional patterns of 0-group Pacific cod (Gadus macrocephalus) in the eastern Bering Sea under variable recruitment and thermal conditions

Creator:: Hurst, Thomas P., Moss, Jamal H., and Miller, Jessica A.
Abstract:: Despite the importance of Pacific cod in Bering Sea fisheries and foodwebs, little is known about the habitat use and the distribution of early life stages. We analysed 6 years of catch data for 0-group Pacific cod in fishery-independent surveys of the Bering Sea shelf. Juvenile cod were most commonly...
Resource Type:: Article
Full Text:: *, Jamal H. Moss2, and Jessica A. Miller3 1Resource Assessment and Conservation Engineering Division

When is bigger better? Early marine residence of middle and upper Columbia River spring Chinook salmon

Creator:: Tomaro, Londi M., Teel, David J., Peterson, William T., and Miller, Jessica A.
Abstract:: Early ocean residence is considered a critical period for juvenile salmon although specific survival mechanisms are often unidentified and may vary by species or life stage. Columbia River spring-run Chinook salmon Oncorhynchus tshawytscha abundance has declined dramatically since the early 1900s. To elucidate mechanisms of early marine survival, we tested...
Resource Type:: Article
Full Text:: salmon Londi M. Tomaro1*, David J. Teel2, William T. Peterson3, Jessica A. Miller1 1Coastal Oregon

It’s in Their Bones: Ecological Drivers of Kemp’s Ridley Sea Turtle (Lepidochelys kempii) Somatic Growth and Population Dynamics

Creator:: Ramirez, Matthew D.
Abstract:: Somatic growth variation manifests from the cumulative effects of a suite of biological, ecological, and environmental processes and can have profound effects on individual fitness and species population dynamics. As ectotherms whose growth dynamics are greatly influenced by environmental factors, sea turtles display considerable variation in somatic growth within and...
Resource Type:: Dissertation
Full Text:: projects. Thank you to Jessica Miller, Alyssa Shiel, and Jennifer McKay, who exposed me to exciting new

eDNA as a tool for identifying freshwater species in sustainable forestry: A critical review and potential future applications

Creator:: Coble, Ashley A., Flinders, Camille A., Homyack, Jessica A., Penaluna, Brooke E., Cronn, Richard C., and Weitemier, Kevin
Abstract:: Environmental DNA (eDNA) is an emerging biological monitoring tool that can aid in assessing the effects of forestry and forest manufacturing activities on biota. Monitoring taxa across broad spatial and temporal scales is necessary to ensure forest management and forest manufacturing activities meet their environmental goals of maintaining biodiversity. Our...
Resource Type:: Article
Full Text:: . Coble, Camille A. Flinders, Jessica A. Homyack, Brooke E. Penaluna, Richard C. Cronn, Kevin Weitemier

Nighttime foraging by deep diving echolocating odontocetes off the Hawaiian islands of Kauai and Ni’ihau as determined by passive acoustic monitors

Creator:: Au, Whitlow W. L., Giorli, Giacomo, Chen, Jessica, Copeland, Adrienne, Lammers, Marc, Richlen, Michael, Jarvis, Susan, Morrissey, Ronald, Moretti, David, and Klinck, Holger
Abstract:: Remote autonomous ecological acoustic recorders (EARs) were deployed in deep waters at five locations around the island of Kauai and one in waters off Ni'ihau in the main Hawaiian island chain. The EARs were moored to the bottom at depths between 400 and 800 m. The data acquisition sampling rate...
Resource Type:: Article
Full Text:: W. L. Au,a) Giacomo Giorli, Jessica Chen, Adrienne Copeland, Marc Lammers, and Michael Richlen

The Western Pacific barred knifejaw, Oplegnathus fasciatus (Temminck & Schlegel, 1844) (Pisces: Oplegnathidae), arriving with tsunami debris on the Pacific coast of North America

Creator:: Chapman, John W., Ta, Nicholas, Miller, Jessica A., Carlton, James T., Miller-Morgan, Timothy, Calvanese, Thomas, Pleus, Allen E., and Burke, James
Abstract:: The Western Pacific Ocean barred knifejaw Oplegnathus fasciatus was found from 2013 to 2015 along the Pacific Coast of North America from Washington to California. The knifejaw was found in derelict vessels that had arrived on the Pacific Coast and that had been lost during the March 2011 Great Japan...
Resource Type:: Article
Full Text:: ), arriving with tsunami debris on the Pacific coast of North America Nicholas Ta1, Jessica A. Miller2

Double-crested Cormorants (Phalacrocorax auritus) and Brandt’s Cormorants (P. penicillatus) Breeding at East Sand Island in the Columbia River Estuary : Foraging Ecology, Colony Connectivity, and Overwinter Dispersal

Creator:: Peck-Richardson, Adam
Abstract:: Double-crested cormorants (Phalacrocorax auritus) and Brandt’s cormorants (P. penicillatus) nest sympatrically in a large mixed-species colony on East Sand Island (ESI) in the Columbia River estuary. Ecological theory predicts that such morphologically similar species will partition prey resources when faced with resource limitations. During the summer of 2014, I investigated...
Resource Type:: Masters Thesis
Full Text:: of our research efforts. Thank you to Jessica Adkins and Karen Courtot for your input on satellite

Piscivorous colonial waterbirds in the Columbia River estuary : demography, dietary contaminants, and management

Creator:: Suzuki, Yasuko
Abstract:: Caspian terns (Hydroprogne caspia) and double-crested cormorants (Phalacrocorax auritus) nest in large colonies on East Sand Island in the Columbia River estuary, the largest known colonies for the two species in the world. Both species of piscivorous colonial waterbirds have been identified as predators with a significant impact on the...
Resource Type:: Dissertation
Full Text:: their valuable help and support; Jessica Adkins, Lindsay Adrean, Dan Battaglia, Ladd Bayliss, Kirsten

Foraging ecology of caspian terns and double-crested cormorants in the Columbia River Estuary

Creator:: Lyons, Donald E.
Abstract:: A detailed understanding of the foraging ecology of species preying upon threatened or endangered prey may contribute to identifying and evaluating management options to reduce predation, when such management is deemed appropriate. In the Columbia River estuary, Caspian terns (Sterna caspia) and double-crested cormorants (Phalacrocorax auritus) have been identified as...
Resource Type:: Masters Thesis
Full Text:: excellent mentor and inspiration during and since our days together in the field. Jessica Adkins and Bobby

Foraging ecology, colony attendance, and chick provisioning of Caspian terns (Sterna caspia) in the Columbia River Estuary

Creator:: Anderson, Scott K.
Abstract:: This study was designed to enhance understanding of factors influencing foraging distribution, diet composition, and overall reproductive success of Caspian terns (Sterna caspia) nesting on East Sand Island in the Columbia River estuary. This colony of nearly 10,000 breeding pairs is of concern to regional resource managers because Caspian terns...
Resource Type:: Masters Thesis
Full Text:: , and nest checks on time: Jessica Adkins, Cindy Anderson, Bobby Begay, Eli Bridge, Nate Chelgren

Susceptibility of juvenile salmonids to avian predation : Are Caspian terns and double-crested cormorants only taking the sick and injured?

Creator:: Hostetter, Nathan J.
Abstract:: The ability to non-destructively assess fish condition and subsequently track fish behavior and survival can be vital in understanding natural and anthropogenic stressors and sources of mortality, especially in populations of fish listed as threatened or endangered. I investigated the use of a quick, non-lethal, external examination technique to assess...
Resource Type:: Masters Thesis
Full Text:: - and lab-mates, including Jessica Adkins, Lindsay Adrean, Dan Battaglia, Lad Bayliss, Kirsten Bixler

Bioenergetics-based predator-prey relationships between piscivorous birds and juvenile salmonids in the Columbia River estuary

Creator:: Lyons, Donald E.
Abstract:: This dissertation focuses on the predator-prey relationship between two species of avian predators, Caspian terns (Hydroprogne caspia) and double-crested cormorants (Phalacrocorax auritus), and one of their important prey types, juvenile salmonids (Oncorhynchus spp.), in the Columbia River estuary of Oregon and Washington states during the period 1998 – 2007. I...
Resource Type:: Dissertation
Full Text:: list. Major collaborators include Jessica Adkins, Karen Courtot, Chris Couch, Anne Mary Myers

Breeding and foraging ecology of Caspian terns (Sterna caspia) in the mid-Columbia River : predation on juvenile salmonids and management implications

Creator:: Antolos, Michelle
Abstract:: I investigated Caspian terns (Sterna caspia) breeding at colonies on the Columbia Plateau (southeastern Washington and northeastern Oregon), with emphasis on the breeding and foraging ecology of Caspian terns nesting at colonies in the mid-Columbia River. I focused research at colonies where Caspian terns foraged on juvenile salmonids (Oncorhynchus spp.)...
Resource Type:: Masters Thesis
Full Text:: , Sadie Wright, Anne Mary Myers, Dan Rizzolo, Kim Nelson, Rob Suryan, Jessica Adkins, Dave Craig, Bobby

Factors affecting colony size, reproductive success, and foraging patterns of double-crested cormorants nesting on East Sand Island in the Columbia River Estuary

Creator:: Anderson, Cynthia D.
Abstract:: The purpose of this study was to investigate the primary factors affecting colony size, reproductive success, and foraging patterns of Double-crested Cormorants (Phalacrocorax auritus albociliatus) nesting at East Sand Island in the Columbia River estuary, the largest colony of this species on the Pacific Coast of North America. This colony...
Resource Type:: Masters Thesis
Full Text:: . Jessica Adkins, Scott Anderson, Nate Chelgren, Don Lyons, Anne-Mary Myers, Kelly Redman, and Rob Suryan

Site fidelity and colony dynamics of Caspian terns nesting at East Sand Island, Columbia River Estuary, Oregon, USA

Creator:: Collar, Stefanie
Abstract:: Fidelity to breeding sites in colonial birds is an adaptive trait thought to have evolved to enhance reproductive success by reducing search time for breeding habitat, allowing earlier nest initiation, facilitating mate retention, and reducing uncertainty of predator presence and food availability. Studying a seabird that has evolved relatively low...
Resource Type:: Masters Thesis
Full Text:: original ladies of CRAPP who inspired me to be a part of the team: Lauren Reinalda, Jessica Adkins

Systemwide Evaluation of Avian Predation on Juvenile Salmonids from the Columbia River Based on Recoveries of Passive Integrated Transponder Tags

Creator:: Evans, Allen F., Hostetter, Nathan J., Roby, Daniel D., Collis, Ken, Lyons, Donald E., Sandford, Benjamin P., Ledgerwood, Richard D., and Sebring, Scott
Abstract:: We recovered passive integrated transponder (PIT) tags from nine piscivorous waterbird colonies in the Columbia River basin to evaluate avian predation on Endangered Species Act (ESA)-listed salmonid Oncorhynchus spp. populations during 2007–2010. Avian predation rates were calculated based on the percentage of PIT-tagged juvenile salmonids that were detected as passing...
Resource Type:: Article

The Response of Caspian Terns to Managed Reductions in Nesting Habitat in the Columbia Plateau Region, Washington State, USA

Creator:: Schniedermeyer, Ethan
Abstract:: Declines in populations of anadromous salmonids (Oncorhynchus spp.) in the Columbia River drainage basin have resulted in extensive programs to annually release large numbers of hatchery-raised juvenile salmonids in an effort to support salmonid restoration. The Pacific Flyway population of Caspian terns (Hydroprogne caspia) has grown from around 3,500 nesting...
Resource Type:: Masters Thesis
Full Text:: (Adkins et al. 2014). This means that the survival of juvenile salmonids is negatively affected by

Caspian tern (Hydroprogne caspia) foraging ecology and predation on juvenile salmonids in San Francisco Bay, California

Creator:: Adrean, Lindsay J.
Abstract:: Brooks Island, located in central San Francisco Bay, California, currently supports the largest breeding colony of Caspian terns (Hydroprogne caspia) in the Bay Area, and is one of several proposed relocation sites for some Caspian terns from the world's largest colony in the Columbia River estuary of Oregon. Juvenile salmonids...
Resource Type:: Masters Thesis
Full Text:: advice, in the field and lab that I could not have done without. Jessica Adkins was the first person

Phylogeography and population genetic structure of double-crested cormorants (Phalacrocorax auritus)

Creator:: Mercer, Dacey M.
Abstract:: The Double-crested Cormorant (Phalacrocorax auritus) is a widespread, colonial, North American waterbird with bicoastal and inland distributions. Four subspecies have been described within North America corresponding to five geographic breeding regions: Interior and North Atlantic cormorants (P. a. auritus); Southeastern cormorants (P. a. floridanus); Alaskan cormorants (P. a. cincinnatus); and...
Resource Type:: Masters Thesis
Full Text:: Mullins, Elise Elliot-Smith, and Caleb Spiegel; as well as the Roby lab including: Jessica Adkins, Karen

Life history and environmental influences on avian incubation and parental care in songbirds

Creator:: Austin-Bythell, Suzanne H.
Abstract:: Patterns of nest attendance behavior by breeding birds represent a parent-offspring trade-off in which adults balance self-maintenance with parental care decisions. Incubation, in particular, is of interest because adults must provide an environment suitable for embryonic development through nest-building and contact-incubation. We evaluated how adult incubation constancy and nest visitation...
Resource Type:: Dissertation
Full Text:: including: Ruby Zambrano, Neil Chartier, David Bradley, Lisa Miller, Rebecca Gamboa, Noah Stryker, Jessica

Evaluating the fatty acid signature technique for studies of diet composition inpiscivorous waterbirds

Creator:: Myers, Anne Mary
Abstract:: This research was designed to evaluate the Fatty Acid Signature (FAS) technique as a non-lethal alternative to more traditional, and sometimes destructive, methods of studying the diet composition of piscivorous birds. Specifically we tested the technique with Caspian terns (Hydroprogne caspia) which currently nest in large numbers in the Columbia...
Resource Type:: Masters Thesis
Full Text:: experience without the incredible support of fellow Roby Lab-mates and friends: Jessica Adkins, Cindy

Disturbance and roosting ecology of California brown pelicans (Pelecanus occidentalis californicus) on East Sand Island in the Columbia River Estuary

Creator:: Wright, Sadie K.
Abstract:: The California brown pelican (Pelecanus occidentalis californicus) is listed as an endangered species under the U.S. Endangered Species Act. The Recovery Plan for this subspecies outlines the need to "Assure long-term protection of adequate food supplies and essential. . .roosting. . . habitat throughout the range." I investigated the effects...
Resource Type:: Masters Thesis
Full Text:: , Casey Bouska, Ian Rose, Lisa Sheffield, Cory Overton, Jessica Adkins, Nate Cheigren, Kim Klein, Ellen

Growth and development of temperate and tropical passerines of the New World : a life history perspective

Creator:: Austin-Bythell, Suzanne H.
Abstract:: I studied developmental rates in a suite of temperate and tropical passerine bird species from the New World to test the hypothesis that tropical passerines exhibit slower patterns of growth and development than temperate birds. I also investigated how the expression of several developmental rates varied with life history traits...
Resource Type:: Masters Thesis
Full Text:: Stryker, Jessica Adkins, Jenn Bruce, and Betzi Perez. I extend my deepest thanks for your dedication

Marine habitat use of black-footed and Laysan albatrosses during the post-breeding season and their spatial and temporal overlap with commercial fisheries

Creator:: Fischer, Karen Naess
Abstract:: Incidental bycatch in commercial fisheries has been identified as a threat to black-footed albatrosses (Phoebastria nigripes) and Laysan albatrosses (P. immutabilis). Effective long-term conservation of these albatrosses necessitates a thorough understanding of their marine distribution, which marine habitats are selected during foraging, and where they are most likely to interact...
Resource Type:: Masters Thesis
Full Text:: , support, and help with the countless “little things” that Jessica Adkins, Anne Mary Myers, and Don Lyons

Trends in Caspian Tern Nesting and Diet in San Francisco Bay: Conservation Implications for Terns and Salmonids

Creator:: Collis, Ken, Roby, Daniel D., Larson, Keith W., Adrean, Lindsay J., Nelson, S. Kim, Evans, Allen F., Hostetter, Nathan, Battaglia, Dan, Lyons, Donald E., Marcella, Tim, and Patterson, Allison
Abstract:: Colony size, nesting ecology and diet of Caspian Terns (Hydroprogne caspia) were investigated in the San Francisco Bay area (SFBA) during 2003-2009 to assess the potential for conservation of the tern breeding population and possible negative effects of predation on survival of juvenile salmonids (Oncorhynchus spp.). Numbers of breeding Caspian...
Resource Type:: Article
Full Text:: . D. Roby, D. P. Craig, S. L. Adamany, J. Y. Adkins and D. E. Lyons. 2002. Colony size and diet

News & Views, 1990/12

Creator:: Edge, Dan
Resource Type:: Other
Full Text:: have a whole new world to explore and enjoy, a new family to raise (daughter Jessica Rose was born in

Effects of body size on the survival and timing of emigration of newly metamorphosed Northern Red-legged frogs

Creator:: Chelgren, Nathan D.
Abstract:: The purpose of this study was to investigate the survival and movements of newly metamorphosed Northern Red-legged frogs (Rana aurora aurora) as they emigrated from two ephemeral breeding ponds. Quantifying survival and movement rates will be important to our understanding how changes to terrestrial and aquatic systems affect behavior and...
Resource Type:: Masters Thesis
Full Text:: , and enthusiastic about our work. Jessica Adkins, Rob Suryan, Robert Lundblad and Cynthia Anderson

Susceptibility of Juvenile Steelhead to Avian Predation: the Influence of Individual Fish Characteristics and River Conditions

Creator:: Hostetter, Nathan J., Evans, Allen F., Roby, Daniel D., and Collis, Ken
Abstract:: Identification of the factors that influence susceptibility to predation can aid in developing management strategies to recover fish populations of conservation concern. Predator-prey relationships can be influenced by numerous factors, including prey condition, prey size, and environmental conditions. We investigated these factors by using juvenile steelhead Oncorhynchus mykiss from the...
Resource Type:: Article

Extrinsic and Intrinsic Factors Associated with Reproductive Success of Caspian Terns (Hydroprogne caspia) at East Sand Island, Columbia River Estuary

Creator:: Bailey, Olivia A.
Abstract:: Declines in wild salmonid (Oncorhynchus spp.) populations in the Columbia River basin have resulted in managers identifying that avian predation on juvenile salmonids is an important limiting factor for salmonid recovery. Caspian Terns (Hydroprogne caspia), particularly those nesting in the Columbia River estuary, were identified as key avian predators that...
Resource Type:: Masters Thesis
Full Text:: Society 130: 385-396. Collis, K., D. D. Roby, D. P. Craig, S. Adamany, J. Y. Adkins, and D. E. Lyons

Patterns of distribution, abundance, and change over time in the marine bird community of Prince William Sound, Alaska, 1989-2012

Creator:: Cushing, Daniel A.
Abstract:: Over recent decades, the marine ecosystems of Prince William Sound (PWS), Alaska have experienced the concurrent effects of a major anthropogenic disturbance, the 1989 Exxon Valdez oil spill (EVOS), and a dynamic atmospheric-oceanic environment. Studies of top marine consumers can provide insights into processes of ecosystem change. Using data collected...
Resource Type:: Masters Thesis
Full Text:: Jessica Adkins, Lindsay Adrian, Kirsten Bixler, Stefanie Collar, Nick Hatch, Tim Lawes, James Lawonn

Why aren't pigeon guillemots in Prince William Sound, Alaska recovering from the Exxon Valdez oil spill?

Creator:: Bixler, Kirsten S.
Abstract:: The Pigeon Guillemot (Cepphus columba) is now the only species of marine bird in Prince William Sound (PWS), Alaska that is listed as "not recovering" on the Exxon Valdez Oil Spill (EVOS) Trustee Council's Injured Resources List and has shown no sign of population recovery. During the 20 years since...
Resource Type:: Masters Thesis
Full Text:: indebted to Jessica Adkins, Betsy Glenn, Karen Courtot, Nathan Hostetter, Don Lyons, Katie Moriarty, and

Potential Effects of Management on Caspian Tern Hydroprogne caspia Predation on Juvenile Salmonids at a Colony in San Francisco Bay, California

Creator:: Adrean, Lindsay J., Roby, Daniel D., Lyons, Donald E., Collis, Ken, and Evans, Allen F.
Abstract:: San Francisco Bay is a proposed relocation site for some of the Caspian terns Hydroprogne caspia currently nesting at the world's largest colony for the species in the Columbia River estuary and consuming salmonids listed under the U. S. Endangered Species Act (ESA). However, several runs of salmonids listed under...
Resource Type:: Article

Breeding and foraging ecology of Caspian terns nesting on artificial islands in the Upper Klamath Basin, California

Creator:: Patterson, Allison (Allison Glider)
Abstract:: Availability of suitable nesting habitat that is free of nest predators and provides access to adequate prey resources within commuting distance is a major factor limiting seabird populations. Caspian terns (Hydroprogne caspia) in western North America have shifted their breeding habitat from naturally occurring habitats in interior wetlands, lakes, and...
Resource Type:: Masters Thesis
Full Text:: . Craig, J. Y. Adkins, A. M. Myers, and R. M. Suryan. 2002. Effects of colony relocation on diet and

Behavioral constraints on harlequin duck population recovery from the Exxon Valdez oil spill in Prince William Sound, Alaska

Creator:: Rizzolo, Daniel J.
Abstract:: I investigated the relationship between harlequin duck (Histrionicus histrionicus) behavior and lack of recovery from the Exxon Valdez oil spill in Prince William Sound, Alaska. First, I evaluated the hypothesis that harlequin ducks in winter have little flexibility to increase foraging time in response to disturbance because they are constrained...
Resource Type:: Masters Thesis
Full Text:: University of Georgia provided much assistance with SAS code. Jessica Adkins, Janel Banks, Jen Britt, Can

News & Views, 2011

Creator:: Hall, Jim
Resource Type:: Other
Full Text:: Hamilton John Haxton George Y. Harry, Jr. Charles & Doris Hazel Patricia Heilman Jack & Marilyn Helle Bob

Lifetime Reproductive Effort

Creator:: Charnov, Eric L., Warne, Robin, and Moses, Melanie
Abstract:: In a 1966 American Naturalist article, G. C. Williams initiated the study of reproductive effort (RE) with the prediction that longer-lived organisms ought to expend less in reproduction per unit of time. We can multiply RE, often measured in fractions of adult body mass committed to reproduction per unit time,...
Resource Type:: Article
Full Text:: crash. Journal of Animal Ecology 59:529–544. Lin, J. Y., and H. Y. Lu. 1982. Population ecology of the

The relationships between fluctuations in oceanographic conditions, forage fishes, predatory fishes, predator food habits, and juvenile salmonid marine survival off the Columbia River

Creator:: Emmett, Robert L.
Abstract:: Salmonid run sizes are strongly affected by their early marine stage. Fully understanding the life history of salmonids means understanding how they interact with their marine environment and with other fishes. Changes in the biological and physical environment off the Columbia River region affects the distribution and abundance of predatory...
Resource Type:: Dissertation

Interactive influences of wildfire and nonnative species on plant community succession in Hawaii Volcanoes National Park

Creator:: Ainsworth, Alison
Abstract:: The role of fire as a natural disturbance, its interactions with nonnative species and effects of repeated fires in the Hawaiian Islands have received little investigation. We are unsure of the role fire played in shaping forest structure and composition as well as affecting evolutionary processes of the native biota....
Resource Type:: Masters Thesis

Carp, Climate, and Water Quality: Applying Systems Modeling to Ecosystem Recovery in Malheur Lake

Creator:: Pearson, James B.
Abstract:: Shallow lakes exist in either a clear or turbid state, with the clear state characterized by an abundance of aquatic macrophytes, diverse aquatic biota, low water column nutrients and phytoplankton biomass, whereas the turbid state is characterized by the opposite. These two distinct states are maintained by reinforcing (positive) feedback...
Resource Type:: Dissertation

Utilizing Fishermen Knowledge and Expertise: Keys to Success for Collaborative Fisheries Research

Creator:: Yochum, Noelle, Starr, Richard M., and Wendt, Dean E.
Abstract:: Collaborative fisheries research provides a mechanism for integrating the unique knowledge, experience, and skills of fishermen and scientists. It is a joint intellectual endeavor that begins with the inception of a project and continues until its final stages, with each group having mutual investment in-and ownership of-the project. Collaborative fisheries...
Resource Type:: Article
Full Text:: Expertise: Keys to Success for Collaborative Fisheries Research Uso del conocimiento y experiencia de los

Effects of Synchronous Low Flow and Temperature Maxima on Coastal Cutthroat Trout and Coastal Giant Salamander: An Experimental Approach

Creator:: Tinoco Pickens, Francisco Andrew
Abstract:: As regional climates warm in the Pacific Northwest, USA, flow minima and temperature maxima may become more synchronous in headwater streams over time. The dual stresses from lower flows and warmer temperatures will be energetically costly for cold-water species such as Coastal Cutthroat Trout and Coastal Giant Salamander. Individual fates...
Resource Type:: Masters Thesis
Full Text:: , Danielle Cacdac, Emily Davelaar, Ashley Harvey, Maya Laincz, Adrielle McIntyre, Anna Neil, and Jessica

Ungulate activity classification : calibrating activity monitor GPS collars for Rocky Mountain elk, mule deer, and cattle

Creator:: Gaylord, Adam J.
Abstract:: Ungulate behavior has been studied extensively but direct observation of free-ranging animals over long periods of time and large geographic areas is often prohibitively difficult. Improved technology, such as GPS collars fitted with motion-sensitive activity monitors, provides researchers with a potential tool to remotely collect fine scale activity and location...
Resource Type:: Masters Thesis
Full Text:: collection and processing: Nathan Alexander, Michelle Barton, Jonah Belk, Jessica Buskirk, Caroline

Physiological ecology of juvenile Chinook salmon (Oncorhynchus tshawytscha) rearing in fluctuating salinity environments

Creator:: Hackmann, Crystal R.
Abstract:: Estuaries provide juvenile salmonids with highly productive feeding grounds, refugia from tidal fluctuations and predators, and acclimation areas for smoltification. However, these dynamic, fluctuating salinity environments may also be physiologically stressful to growing juvenile fish. In order to evaluate the costs and benefits of estuarine marshes to juvenile Chinook salmon,...
Resource Type:: Masters Thesis
Full Text:: . Clarke, editors. Physiological ecology of Pacific salmon. UBC Press, Vancouver. Clarke, W.C., and Y

Photo-identification of Melon-headed Whales (Peponocephala electra) in the Marquesas Islands : Creation of the First Photo-identification Catalog and Estimation of Group Size and Minimum Abundance in a Remote Archipelago

Creator:: McClung, John Ralph, II
Abstract:: For many species of oceanic dolphins, photo-identification and genetic data indicate that these island-associated populations are demographically isolated from pelagic populations and that island-associated populations exhibit very different patterns of movement and habitat use. Melon-headed whales (Peponocephala electra) are generally considered a pelagic dolphin, but have been documented around oceanic...
Resource Type:: Masters Thesis
Full Text:: backbone of this thesis. I would also like to thank Robin Baird, Jessica Aschettino, and Sabre Mahaffy

You are What, When, Where, and How you Eat : Mercury in Avian Food Webs across Multiple Spatial Scales

Creator:: Jackson, Allyson K.
Abstract:: Human alterations of landscapes take many forms, one of which is anthropogenic pollution. Mercury (Hg) is a complex contaminant because its uptake into the food web is not driven entirely by loading to the system; methylation is necessary to make Hg bioavailable and toxic to fish and wildlife. Because methylation...
Resource Type:: Dissertation
Full Text:: Environment 568: 1213 – 1226. Evers, D. C., Y.-J. Han, C. T. Driscoll, N. C. Kamman, M. W. Goodale, K. F

Distribution, habitat associations, and conservation status of Pacific fisher (Pekania pennanti) in Oregon.

Creator:: Barry, Brent R.
Abstract:: Fishers (Pekania pennanti) are medium sized mustelids endemic to North America. Two fisher populations persist in Oregon: an indigenous population in southwestern Oregon, and a reintroduced population in the southern Cascade Mountains. Despite candidacy for listing under the Endangered Species Act, current information on fisher populations in Oregon is scarce....
Resource Type:: Masters Thesis
Full Text:: Levi, Katie Moriarty, Rebecca Hutchinson, field crew: Jessica Buskirk, Jordan Ellison, Andy Andrew

Jumping in with Both Feet: Exploring Factors that Shape Juvenile Amphibian Movement

Creator:: Bredeweg, Evan M.
Abstract:: Investigation into how animals move within the landscape is important for both understanding of ecological processes and conservation management. Animal movement is important in shaping life history transitions, demographics, individual fitness, and species distributions. However, as landscapes become increasingly affected by human activities, movement becomes important as species navigate landscapes...
Resource Type:: Dissertation
Full Text:: , Kate Self, Peter Kappes, Linsey Arnold, Jessica Castillo Vardaro, Doni Schwalm, Evan Jackson, Jessica

Sex matters: Otolith shape and genomic variation in deacon rockfish (Sebastes diaconus)

Creator:: Vaux, Felix, Rasmuson, Leif K., Kautzi, Lisa A., Rankin, Polly S., Blume, Matthew T. O., Lawrence, Kelly A., Bohn, Sandra, and O'Malley, Kathleen G.
Abstract:: Little is known about intraspecific variation within the deacon rockfish (Sebastes di‐ aconus), a recently described species found in the northeast Pacific Ocean. We in‐ vestigated population structure among fish sampled from two nearshore reefs (Siletz Reef and Seal Rock) and one offshore site (Stonewall Bank) within a <50‐km2 area...
Resource Type:: Article
Full Text:: affected by differences in sex, age, and gene flow between the nearshore and offshore environments. K E Y

Otolith Morphometrics as a Tool for Conservation and Management of Chinook Salmon (Oncorhynchus tshawytscha)

Creator:: Koeberle, Alexander L.
Abstract:: Chinook salmon are widely distributed across the globe with native stocks in the North Pacific Ocean and self-sustained populations introduced to regions in the Northern and Southern Hemispheres. Pacific salmon are economically and ecologically important to the Pacific Northwest, USA, yet several wild populations are federally listed as endangered or...
Resource Type:: Masters Thesis
Full Text:: , Jessica Miller, and Klaus Puettmann, and their feedback strengthened the final manuscript of this thesis

Movement, dive behavior, and habitat-use of common murres (Uria aalge) in the Northern California Current System under variable ocean conditions

Creator:: Loredo, Stephanie A.
Abstract:: Year-round habitat use of marine predators provides knowledge of important marine areas throughout different life stages. Large-scale, environmental variability, both in space and time, causes changes in the behavior and distribution of marine predators that are important to quantify for conservation. In the Northern California Current System (NCCS), common murres...
Resource Type:: Masters Thesis
Full Text:: learned from Cheryl Horton, Amanda Gladics, Amelia O’Connor, and Jessica Porquez whose positive dynamic

Worldwide phylogeography and local population structure of the rough-toothed dolphin (Steno bredanensis)

Creator:: Albertson, G. Renee
Abstract:: Several dolphin species have global distributions. The extent of their radiation and limits to gene flow are presumably a product of oceanographic features both recent and historical, behavioral specializations and social organization. Rough-toothed dolphins (Steno bredanensis) are globally distributed in tropical and subtropical waters and are generally found in depths...
Resource Type:: Dissertation

Spatio-temporal Patterns and Ecological Drivers of Harbor Porpoise (Phocoena phocoena) off the Central Oregon Coast, USA

Creator:: Holdman, Amanda
Abstract:: The marine environment is under increasing pressure from human activities worldwide, particularly in coastal waters, creating a need to better understand fine-scale distributions of highly mobile species that occur in the area, as they are frequently most threatened. Harbor porpoise (Phocoena phocoena) occur frequently in Oregon’s nearshore habitat, but due...
Resource Type:: Masters Thesis
Full Text:: Sullivan, Jessica Porquez, and Shea Steingass, thank you for always being ready to laugh or go on a walk

Top-down Influences of bald eagles on common murre populations in Oregon

Creator:: Horton, Cheryl A.
Abstract:: Populations of organisms are influenced by both top-down (predator driven) and bottom-up (environment or resource driven) effects. Seabird research has largely focused on bottom-up factors influencing reproduction, with little emphasis on top-down. Our goal was to better understand top-down impacts on colonial nesting seabirds over a range of spatio-temporal scales....
Resource Type:: Masters Thesis
Full Text:: Gladics, Amelia O’Conner, and Jessica Porquez thank you for creating a collaborative atmosphere and

Potential for dispersal of the non-native parasite Myxobolus cerebralis : qualitative risk assessments for the state of Alaska and the Willamette River Basin, Oregon

Creator:: Arsan, E. Leyla
Abstract:: First introduced to the USA in 1958, Myxobolus cerebralis, the parasite responsible for whirling disease in salmonids, has since spread across the country causing severe declines in wild trout populations in the intermountain west. Recent development of risk assessment models used to assess the likelihood and consequences of exotic parasite...
Resource Type:: Masters Thesis
Full Text:: bases: R=A+G, K=T+G, Y=C+T.……………………………………………………………… 75 4.1 Definitions of probability levels used

Evaluating the data-poor fishery stock assessment method, DB-SRA

Creator:: Owashi, Brandon R.
Abstract:: Depletion-Based Stock Reduction Analysis (DB-SRA; Dick and MacCall, 2011) is a catch-only fisheries stock assessment model that has been developed to estimate an overfishing limit (OFL) in data-poor situations. DB-SRA projects the biomass trajectories of a stock by means of a catch time series and five parameters: the instantaneous, per...
Resource Type:: Masters Thesis
Full Text:: , both directly and indirectly. Much thanks to Jessica Castillo for sharing the Nash computers with me

Is the past present? Historical splash-dam mapping and stream disturbance detection in the Oregon Coastal Province

Creator:: Miller, Rebecca R.
Abstract:: Severe scouring from splash damming was one of the earliest reported forms of widespread anthropogenic disturbance in streams of the Pacific Northwest, USA. Splash damming was a common method of log transport in western Oregon from the 1880s through the 1950s. Before being released in large freshets to downstream lumber...
Resource Type:: Masters Thesis
Full Text:: searching easy. It was wonderful swapping splash-dam stories and ideas with Jessica Phelps! Thanks to

News & Views, 2008

Creator:: Hall, Jim
Resource Type:: Other
Full Text:: Fortune Ronald Friesz Erik Fritzell & Ell-Piret Multer Mary Fryer Sarah Gall Tony & Jessica Gharrett

Description and prediction of broad-scale spatial variability in expression of anadromy in female Oncorhynchus mykiss in the John Day River, Oregon, USA

Creator:: Mills, Justin S.
Abstract:: Partial migration is a common migratory behavior where some individuals in a population migrate and others do not. Patterns of partial migration can vary dramatically, especially for species that inhabit a wide range of environments. I described and predicted spatial variation in marine migration (anadromy) of female Oncorhynchus mykiss (steelhead...
Resource Type:: Masters Thesis
Full Text:: understanding of the species. My family and friends had been very supportive and patient, Jessica most of all

Fine scale foraging behavior of gray whales in relation to prey fields and vessel disturbance along the Oregon Coast

Creator:: Sullivan, Florence A.
Abstract:: The desire to understand the spatial and temporal drivers of animal behavior and distribution relative to scale is central to movement ecology. Optimal foraging theory states that a predator should continue exploiting a patch until it is no longer profitable to do so. As human developments increasingly encroach on the...
Resource Type:: Masters Thesis
Full Text:: to Jessica Andrade and Michelle Stowell for reminding me to step away from my desk and go dancing

Spatial and temporal scales of genetic change in two overfished rockfishes

Creator:: Gomez-Uchida, Daniel
Abstract:: Pacific rockfishes (genus Sebastes) have attracted wide scientific and public interest from an evolutionary, fishery and conservation standpoints. This dissertation addresses several hypotheses involving spatial and temporal scales of genetic change in two overfished rockfishes, darkblotched (S. crameri) and canary rockfish (S. pinniger), using statistical analyses of genetic variation within...
Resource Type:: Dissertation

Landscape features affecting genetic diversity and structure in East African ungulate species

Creator:: Crowhurst, Rachel Selena
Abstract:: Habitat loss and fragmentation is a crisis affecting wildlife worldwide. In Tanzania, East Africa, a dramatic and recent (<80 years) expansion in human settlement and agriculture threatens to reduce gene flow among protected areas for many species of large mammals. Wildlife linkages can mitigate population isolation, but linkage designs lacking...
Resource Type:: Masters Thesis
Full Text:: your thoughtful advice. Thank you also to the Epps lab members (Katie, Mark, Jessica, Anne, Tyler

Making the Connection: Linking Stress Physiology of Juvenile Northern Spotted Owls to Environmental Variation and Long-term Survival

Creator:: Mikkelsen, Ashlee J.
Abstract:: The northern spotted owl (Strix occidentalis caurina; spotted owl) is of conservation concern and endemic to mature forests of the Pacific Northwest. Adult survival has a strong effect on population growth rate, but juvenile survival and recruitment are also important components of population change. Despite the importance of this life...
Resource Type:: Masters Thesis
Full Text:: . Jessica Clark, Ryan Baumbusch, Dr. Virginia Morandini, Leila Duchac, Marie Tosa, Dr. Julie Jenkins

Beached Bones: Exploring the Genetic Impact of Exploitation on the Diversity of Great Whales in the South Atlantic

Creator:: Sremba, Angela L.
Abstract:: Commercial whaling during the 20th century drastically reduced many populations of great whales in the Southern Hemisphere. The Antarctic blue whale, for example, is estimated to have been reduced to less than 0.1% of its original abundance based on catch records and population dynamic models. Despite this population bottleneck, several...
Resource Type:: Dissertation
Full Text:: Marine Science Center community over the past 10 years, including Erin Fedewa, Jessica Luo, Marisa Litz

Genomics of migration : from marine distributions of salmonids to mechanisms of olfactory and magnetic cue perception for natal homing

Creator:: Bellinger, M. Renee
Abstract:: Substantial scientific investment has been directed towards understanding factors that influence distribution patterns and animals' remarkable ability for precise orientation and navigation, yet fundamental gaps in our knowledge remain. In my dissertation, I applied emerging genetic technologies to conduct a top-down and bottom-up investigation of animal movement and cue perception....
Resource Type:: Dissertation
Full Text:: and Hovey Grosvenor, Jessica Waddell, Janet Webster, Jeany Volk, and Melody Pfister. I am grateful

Human Alteration of a Neotropical Landscape Drives Long-term Changes in its Forest Bird Communities

Creator:: Curtis, Jenna R.
Abstract:: Human alteration of natural landscapes leads to biodiversity loss, often from a combination of area effects and fragmentation effects. Smaller habitat patches support fewer species than large ones and incur additional consequences from isolation. Efforts to preempt biodiversity loss from insular habitat fragments are complicated by individualistic species responses and...
Resource Type:: Dissertation
Full Text:: , Pete Kappes, and Scott Jennings. Special shout-outs to Drs. Jessica and Michael Castilio- Valerdo

Direct and indirect effects of livestock grazing intensity on processes regulating grassland bird populations

Creator:: Johnson, Tracey N.
Abstract:: In grasslands, grazing by large ungulates can influence vegetation structure, composition, primary productivity, and ultimately, ecosystem functioning. While grazing represents a complex disturbance, grazing intensity largely determines the effects of grazing on vegetation. Structural and compositional changes in the plant community caused by grazing could have bottom-up effects on species...
Resource Type:: Dissertation
Full Text:: , Joseph Smith, Michel Therrien, and Jessica Torres. I would especially like to acknowledge Andrea

Habitat use, spatial ecology, and stable isotope variability of the Pacific harbor seal (Phoca vitulina richardii) along the Oregon coast

Creator:: Steingass, Sheanna M.
Abstract:: Pacific harbor seals (Phoca vitulina richardii) are one of Oregon’s most common coastal predators, numbering between 10,000 and 12,000 individuals (Brown et al. 2005b). They consume more than 149 species or types of marine prey within the Pacific Northwest, which include a large variety of commercially important fisheries species. Despite...
Resource Type:: Dissertation
Full Text:: Florence Sullivan, Jessica Andrade, Amanda Holdman, Breeze Kelley, Miram Gleiber, Mee-ya Monnin, Norma

The use of burned forest by breeding birds following the Biscuit Fire in southwest Oregon

Creator:: Donaghy Cannon, Michelle M.
Abstract:: Fire severity is hypothesized as an important driver of bird responses to wildfire. For those species that typically respond negatively to increasing severity, Accessibility of high-severity burned forest may be dependent on the proximity of unburned or low-severity burned forest to meet all of the needs of breeding bird species...
Resource Type:: Dissertation
Full Text:: assistance from Kendra Brewer, Jacob Cowan, Jim DeStaebler, Elizabeth Donadio, Jessica Flayer, Susan

Landscape-Level Approaches to Desert Bighorn Sheep (Ovis canadensis nelsoni) Conservation in a Changing Environment

Creator:: Creech, Tyler G.
Abstract:: Landscape characteristics can strongly influence demographic and genetic processes in wildlife populations. Climate change and human land use are causing many landscapes to change rapidly, and the effects on wildlife populations must be understood to properly manage these threats and design effective conservation strategies. In this dissertation, I explored the...
Resource Type:: Dissertation
Full Text:: , Brandon Nickerson, Jessica Castillo, and Mike Buchalski. Lastly, I would like to express my profound

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