Birds perform valuable ecological functions and are useful environmental indicators. Avian distributions and diversity are predicted to change over the next 50 years. Little information exists on the role of local and regional conditions in fluctuations of avian communities over time. Historic datasets present a legacy of information that helps...
The Cackling goose (Branta hutchinsii minima) population has increased from a low of 20,000 in 1984 to the current population of 220,000-300,000 (Stehn 2012, Sanders 2013). As the Cackling goose population began to recover in the late 1990s, the majority of the population relocated from wintering in California to the...
The mechanisms of mortality during critical life stages of fish are not well-understood and, for many species, it is not clear if the mechanisms are similar for naturally and artificially propagated individuals. For Chinook salmon (Oncorhynchus tshawytscha), natural fish potentially face negative interactions, such as competition, and survival disadvantages, such...
Nest sites of reticulate sculpin (Cottus perplexus) were located in two stream reaches, one from a basalt basin and one from a sandstone basin. Stream reaches were similar in gradient, basin area, elevation, climate, and riparian vegetation but differed in biologic community structure and substrate characteristics. An electivity index was...
Many factors should be considered before selecting a graduate program to attend. Graduate education can be expensive, so financial and health care benefits offered by a department or college should be considered when selecting a graduate program. A majority of fisheries graduate students recently surveyed believed that financial aspects should...
We used radio and acoustic telemetry to study the behavior and survival of wild steelhead trout (Oncorhynchus mykiss) and hatchery coho salmon (Oncorhynchus kisutch) and steelhead outmigrants in a small coastal estuary during two years. Survival was generally low for hatchery fish but more variable, both within and between years,...
Estimation of belowground carbon stocks in tropical wetland forests requires funding for laboratory analyses and suitable facilities, which are often lacking in developing nations where most tropical wetlands are found. It is therefore beneficial to develop simple analytical tools to assist belowground carbon estimation where financial and technical limitations are...
This thesis evaluates the current break-and-burn ageing method for the southern stock (U.S. west coast) of sablefish (Anoplopoma fimbria). Differences in growth rates between the northern (north of Vancouver Island, BC) and southern stocks (south of Vancouver Island, BC) and results from a radiometric study conducted on fish from the...
Recent comparative studies across sex-changing animals have found that the relative size and age at sex change are strikingly invariant. In particular, 91%–97% of the variation in size at sex change across species can be explained by the simple rule that individuals change sex when they reach 72% of their...
The population of Catostomus rimiculus from Jenny Creek basin is identified as a dwarfed derivative of the normally much larger C. rimiculus from the Klamath and Rogue River systems. C. rimiculus in Jenny Creek basin are separated from those in the Klamath by a series of 3-10m waterfalls resulting from...
Understanding food webs is fundamental in conserving endangered species and maintaining healthy ecosystem function, particularly in desert spring systems. We identified dominant energy sources in the Muddy River Warm Springs area, Clark County, NV using carbon and nitrogen natural abundance stable isotope analyses. We examined isotopic signatures of specific macroinvertebrate...
A group of trout that reside in streams of the desiccating lake
basins of southeastern Oregon differ markedly from other known
Salmo. Known commonly as the red-band trout, this fish was subjected
to chromosome analysis for comparison with other species of
western North American Salmo. The karyotype of the red-banded...
New approaches are needed to quantify and understand spatial patterns of stream fishes and their environment. Concepts in riverine ecology emphasize the importance of thermal zones and gradual longitudinal changes in physical habitat and biota, but little is known about spatial variability within the river continuum. I present a conceptual...
Mediterranean-climate regions (med-regions) are global hotspots of endemism 40 facing mounting environmental threats associated with human-related activities, including the ecological impacts associated with non-native species introductions. We review freshwater fish introductions across med-regions to evaluate the influences of non-native fishes on the biogeography of taxonomic and functional diversity. Our synthesis...
Classification of Streams and stream habitats is useful for research involving establishment of monitoring stations, determining local impacts of land use practices, generalization from site-specific data, and assessment of basin-wide, cumulative impacts of human activities on streams and their biota. This thesis presents a framework for a hierarchical classification system,...
A critical seasonal event for anadromous Chinook salmon (Oncorhynchus tshawytscha) is the time at which adults migrate from the ocean to breed in freshwater. We investigated whether allelic variation at the circadian rhythm genes, OtsClock1a and OtsClock1b, underlies genetic control of migration timing among 42 populations in North America. We...
Depleted species of rockfish (Sebastes spp.) from the Northeast Pacific experience high discard mortality due to "barotrauma," induced from the rapid change in pressure during capture. Research suggests rockfish have the potential to survive barotrauma if immediately recompressed, but the potential for long-term recovery is unknown. In this project, we...
The genotype frequencies of one-year-old oyster spat
(Crassostrea gigas) from parents of known genotype, are compared
to the frequencies expected with Mendelian inheritance. The genotypes
are characterized at three enzyme loci, Aspartate amino-transferase
(AAT), Phosphohexose isomerase (PHI) and Leucine
aminopeptidase (LAP), and a general protein locus. In this study
expression...
The distribution and range of the greater sage-grouse Centrocercus urophasianus have been reduced by 56% since the European settlement of western North America. Although there is an unprecedented effort to conserve the species, there is still considerable debate about the vegetation composition and structure required for nesting and brood-rearing habitat....
The distribution and range of lesser prairie-chicken (Tympanuchus pallidicinctus) has been reduced by >90% since European settlement of the Great Plains of North America. Currently, lesser prairie-chickens occupy 3 general vegetation communities: sand sagebrush (Artemisia filifolia), sand shinnery oak (Quercus havardii), and mixed-grass prairies juxtaposed with Conservation Reserve Program grasslands....
To understand the influence of selective harvesting on
the adaptive capacity of fish populations in changing
environments, a computer simulation model was developed. In
the model, hypothetical populations were composed of five
different life histories, which were genetically determined.
Each life history type had its own rate of survival and...
The research involved development of two ecological
simulation models to explain the complex dimensionality of
chinook salmon (Oncorhynchus tshawytscha) life history
structure (represented by the age composition of the
spawning stock) and management difficulties entailed in the
complexity.
Since different sizes of chinook salmon are thought to
adapt differently to...
This thesis focuses upon whether stressful aspects of an organism's environment are reflected by that organism's shape. It presents an application of the powerful thin-plate spline and relative warp methods from morphometric analysis to demonstrate the overall utility of morphometrics in detecting environmental stress in an estuarine flatfish, the English...
Initially, components of an aquatic food web were examined to study impacts of recreational use on the aquatic ecology of Quartzville Creek, Oregon in 1995 and 1996. Measurements of the food web components consisted of observations of harlequin ducks (Histrionicus histrionicus), visual counts of the larval caddisfly Dicosmoecus gilvipes, benthic...
Four streams-Clear Fork, Lost Creek, Camp Creek and Still Creek-in northwestern Oregon's Sandy River Basin were monitored for temperature, dissolved oxygen levels, and fecal bacterial concentrations in a multi-year analysis examining stream health for recreational users and anchor habitat for Pacific Salmon. Temperatures were recorded using micro -T temperature loggers...
Western Atlantic synodontid species were studied as part of an ongoing effort to reanalyze Caribbean shorefish diversity. A neighbor-joining tree constructed from cytochrome c oxidase I (COI) data revealed 2 highly divergent genetic lineages within both Synodus intermedius (Agassiz, 1829) (Sand Diver) and S. foetens (Linnaeus, 1766) (Inshore Lizardfish). A...
An aspect of the genetic structure of coastal Oregon steelhead was
explored and found to gradually change in a north to south pattern for the
allelic frequencies of several enzymes. Isocitrate dehydrogenase and
superoxide dehydrogenase were the clearest examples of this pattern of
variation. This pattern was most evident in...
The rainbow trout population in Elder Creek, Oregon was
studied between June 1965 and November 1966. The physical characteristics
of the stream during the summer season were described.
Rainbow trout were captured in each of three sections on the stream
by electrofishing and were tagged and measured. Population size,
mortality,...
Between 1970 and 1974, data were collected on the distribution and biology of the spotted owl (Strix occidentalis) in Oregon. One-hundred and sixteen pairs and seven single birds were located. Spotted owls occurred throughout the mountains of western Oregon and on the east slope of the Cascade Range at least...
Marine provinces, founded on contrasting floras or faunas, have been recognized for more than 150 years but were not consistently defined by endemism until 1974. At that time, provinces were based on at least a 10% endemism and nested within biogeographic regions that covered large geographic areas with contrasting biotic...
Field collections in the Southern Gulf of Oman and the Northwestern Arabian Sea, and
examination of museum collections from this study area, yielded 7 genera and 33 species
of apogonid fishes. Twenty one species of Apogon, one Archamia, four Cheilodipterus,
three Fowleria, one Rhabdamia, two Siphamia, and one Holapogon are...
Descriptions and distributions are given of 28 species of
Liparidae occurring or possibly occurring below 200 m between San
Francisco and northern Vancouver Island, with keys for their identifications.
Nine genera are included: Careproctus, Elassodiscus,
Lipariscus, Nectoliparis, Rhinoliparis, Acantholiparis, Paraliparis,
and two new genera are described, Odontoliparis and Osteodiscus.
Eight...
The taxonomic placement of Gadopsidae is discussed and an evaluation of its osteological relationships with related families is given. Similarities to the more primitive genera of the trachinoids, notothenioids, and uranoscopoids are noted and the inclusion of Gadopsidae in the Trachinoidae is recommended. A description of the geological history of...
Research on cetacean foraging ecology is central to our understanding of their spatial and behavioral ecology. Yet, functional mechanisms by which cetaceans detect prey across different scales remain unclear. Here, I postulate that cetaceans utilize a scale-dependent, multimodal sensory system to assess and increase prey encounters. I review the literature...
Conceptually, the dynamics of wood in streams can be viewed in terms of input and in-channel processes. Input processes are associated with both the riparian (tree fall, bank cutting, windthrow) and upslope forests (mass failures). In-channel processes include log breakage, movement, and decomposition. A mechanistic view of these processes is...
The influence of land use on potential fates of nitrate (NO3-) in stream ecosystems, ranging from denitrification to storage in organic matter, has not been documented extensively. Here, we describe the Pacific Northwest component of Lotic Intersite Nitrogen eXperiment, phase II (LINX II) to examine how land-use setting influences fates...
A generalized mathematical model of ecosystems is
developed. The model begins with the general class of
systems known as state-determined systems, in which the
time-derivative of each state variable is a function of some
subset of the set of all system state variables and
.environmental parameters. A formal basis is...
Adequate management and scientific investigation of ecosystems
depends on classification of landscape systems based on all significant
bio-physical and associated cultural properties. The present
classification is a hierarchical systems design that can be modeled in
terms of a natural system interacting with its level-specific
environment. A watershed system in this...
A theoretical framework for economic fishery management was
developed. Extensive isocline analysis of a general fishery model
yielded a detailed look at the possible equilibrium behavior of a
system that was allowed to vary in terms of the levels of its
environmental parameters, its composition, and the response functions
governing...
Twentieth century commercial whaling drastically reduced the abundance of great whale populations in the Southern Ocean. Exploitation began on the south Atlantic island of South Georgia, where catch records account for over 175,000 whales killed. Modern whaling within the Southern Ocean depleted populations rapidly, and by 1966, hunting blue whales...
Patterns of seasonal abundance of harbor seals at Netarts and Tillamook Bays, Oregon, were documented by recording numbers of seals hauling out on tidally exposed sand flats in both bays. Harbor seal abundance at Tillamook Bay peaked during pupping (May-June) and molting (August) periods, while peak abundance at Netarts Bay...
Fisheries management that is based on quantitative assessment has commonly relied on estimating the unfished biomass of a fished stock to compare current and historical population size. Developing predictive models for this requires many years of catch and abundance data. Smaller, new, or mainly recreational fisheries may not have the...
Harbor porpoises (Phocoena phocoena) are commonly observed in Oregon's nearshore marine environment yet knowledge of their ecosystem use and behavior remains limited, generating concerns for potential impacts on this species from future coastal development. Passive acoustic monitoring was used to investigate spatial and temporal variations in the presence and foraging...
The dynamic nature of most environments forces many animals to move to meet their fundamental needs. This is especially true in aquatic environments where shifts in spatial ecology (which are a result of movements) are among the first adaptive responses of animals to changes in ecosystems. Changes in the movement...
Following a four-year period of writing, member comment, and multiple revisions, the AFS Position Paper and Policy on Mining and Fossil Fuel Extraction was approved unanimously by the membership at the Society's annual business meeting August 19, 2015, in Portland, Oregon. The entire document can be read at fisheries.org/policy_statements; a...
Upper Klamath Lake in southern Oregon has two species of lacustrine suckers,
Lost River sucker Deltistes luxatus and shortnose sucker Chasmistes brevirostris that
were historically abundant. Results of surveys performed in the mid-1980's indicated that populations of both species were declining and ageing with apparent recruitment failure in most years...
The corvina reina (Cynoscion albus) is an important part of the artisanal fishery
in the Gulf of Nicoya, Costa Rica. Stock assessment on this sciaenid species has been
restricted to the use of length-based methods because of the lack of age data. Direct age
determination methodologies for tropical species often...
Waldo Lake, located in the Oregon Cascades, is
considered to be one of the most dilute lakes in the
world. Even with very low nutrient concentrations and
sparse populations of zooplankton, introduced fish in the
lake are large in size and in good condition when compared
to fish from other...
A study was conducted at Yaquina Bay, Oregon, to determine
the age-fecundity relationships in the striped seaperch Embiotoca
lateralis. A questionnaire was sent to California, Oregon, and
Washington to ascertain what regulations were in effect, and the value
of the family Embiotocidae with regard to the sport and commercial
harvest....
Northern Spotted Owls (Strix occidentalis caurina) are a long-lived forest owl and range-wide declines in their numbers have resulted in the species being listed as threatened under the endangered species act. While many studies have been focused on population trends and reproductive performance of Spotted Owls from different age-classes, none...
We used mark-recapture methods to estimate age-specific apparent survival rates for male Lesser Prairie-Chickens (Tympanuchus pallidicinctus), a gamebird of conservation concern. A total of 311 male prairie-chickens (135 yearlings, 176 adults) were captured and banded during a 5-year study in southwest Kansas. Time-since-marking models were used to estimate apparent survival...
Despite being a highly charismatic and frequently exhibited organism,
Giant Pacific Octopus (Enteroctopus dofleini) population dynamics
are poorly understood. Basic monitoring data for this species is
limited to bycatch and stomach contents of other fisheries species. An
essential step to a better estimation of population size and
productivity is to...
The potential impact of chemical contaminants and conservation practices on amphibians in agricultural landscapes is a key research topic globally. Amphibians represent a common group in many freshwater systems and are currently experiencing worldwide population declines. Global amphibian declines may be attributed to a number of causes, including habitat loss,...
Streams that dry during part of the year are common throughout the world, yet studies of the macroinvertebrate assemblages in these types of streams are rare compared to those in permanent streams; and studies that assess the effects of agriculture on temporary stream invertebrates are even rarer. We studied macroinvertebrate...
The critically endangered Maui's dolphin (Cephalorhynchus hectori maui) and the endangered Hector's dolphin (C. h. hectori) are endemic to the coastal waters of New Zealand, where their primary threat is fisheries-related mortality. The Maui's dolphin is among the most critically endangered cetaceans in the world, with its remnant population primarily...
The distribution of American martens (Martes americana) within Sagehen Creek Experimental Forest (SCEF), Tahoe National Forest, California has been periodically documented from 1980–1993. This area has been the location of nine marten surveys, each involving a systematic detection/nondetection survey on the same grid. These data are an unprecedented time series...
Background. Ampelisca eschrichtii Krøyer, 1842 of the Sakhalin Shelf of the Okhotsk Sea, Far Eastern Russia, comprise the highest known biomass concentration of any amphipod population in the world and are a critically important prey source for western gray whales. Growth and reproduction in this population has not been apparent...
Forecasts of the impacts of climate change have traditionally focused on individual species and their phenotypes, phenology, or distribution. However, shifts in species distributions and the resulting reorganization of community composition represent an important violation to the assumption of species acting in isolation. Whereas species may respond individualistically to climate...
One of the biggest challenges when conducting a national-scale assessment of lakes, such as the 2007 US National Lake Assessment (NLA), is finding enough reference lakes to set appropriate expectations for the assessed sites. In the NLA, a random design was used to select lakes for sampling to make unbiased...
The natural environment provides important services and benefits to peoples’ health and lives. Conversely, environmental disservices can have negative impacts on humans such as through pollution, chemical toxins, and climate change. The combination of environmental services and disservices encompass how human health and wellbeing, and the environment are connected. As...
Effects of habitat and season on guild structure of avian
communities were examined for islands in the estuary zone of the
Columbia River, Oregon. Bird species were classified into guilds
according to their major food item, typical foraging substrate, and
foraging behavior. Variation in community structure indices (number of
guilds,...
The impact that pesticides may have had on the mortality rates and productivity rates of non-game birds during the last 25 years was evaluated by studying the population dynamics of 16 species. A mathematical model showing the relationships between population parameters that yielded stable populations was developed. The information needed...
The dissertation introduces community-based adaptive watershed management (CAWM) as a holistic conservation framework. The CAWM
framework integrates social and ecological suitability to achieve conservation outcomes. The core theoretical concepts consist of adaptive management, adoption-diffusion,
symbolic interactionism, community-based conservation, spatial analysis and watershed management. The CAWM framework is applied to the...
Long-term oceanographic and meteorological data were used to develop models that describe the observed variation in the recruitment of Pacific mackerel (Scomber japonicus) in the California
Current region. The models that were found to best describe recruitment included both density-dependent factors and environmental factors. Models incorporating only density-dependent factors
accounted...
Because of large declines in abundance of many Eastern Pacific rockfish populations (Genus Sebastes), there has been an increasing effort to improve our understanding of the role of spawning population characteristics and individual reproductive success in recruitment variability and population dynamics. Current methods for assessing sex and maturational status in...
Biliary excretion has been of considerable interest in mammals
but has not been extensively studied in fish. To understand the
significance of biliary excretion in rainbow trout (Salmo gairdneri),
two studies were conducted.
The objective of the initial study was to evaluate the ability of
rainbow trout to excrete a...
During the summers of 1970 and 1971 a total of 95 sea otter (Enhydra lutris) were shipped to Oregon from Amchitka Island, Alaska. The 1970 shipment consisted of 31 otter which were to be released on the southern Oregon Coast near the town of Port Orford. Two of these animals...
Collaborative decision-making is often promoted as a means to achieve socially acceptable and enduring solutions to natural resource management issues, and one that holds promise for resolving “wicked” problems. However, success rates for implementation of collaborative recommendations are unknown. This paper explores challenges to collaborative salmon fishery management in Prince...
Several types of instream structures were evaluated for their
potential to provide rearing habitat and to increase reach carrying
capacity for steelhead trout (Salmo gairdneri). Evaluation was
conducted in each season over the course of 1 year.
Blast pools created in bedrock glides increased the carrying
capacity of stream reaches...
Numerous populations of salmon and trout undergo extensive migrations, migrating from freshwater to the sea and throughout ocean basins. Years later they return to their natal streams with remarkable accuracy and precision. The outward migration is accomplished without the benefit of following experienced migrants or prior individual experience. Evidence suggests...
Two indigenous species of burrowing shrimp inhabit and often dominate the intertidal zone of estuaries along the US West Coast, the ghost shrimp, Neotrypaea californiensis, and the blue mud shrimp, Upogebia pugettensis. Both species are considered ecosystem engineers and play a role in maintaining estuarine health and ecosystem function. They...
Species conservation depends on robust population assessment. Data on population abundance, distribution, and connectivity are critical for effective management, especially as baseline information for newly documented populations. I describe a pygmy blue whale (Balaenoptera musculus brevicauda) population in New Zealand waters with year-round presence that overlaps with industrial activities. This...
The genetic basis of adaptation is complex as many fitness-related traits are quantitative and likely influenced by multiple genes with variable effects across different selective environments. One important adaptation for anadromous Chinook salmon (Oncorhynchus tshawytscha) is the time at which individuals return to natal breeding sites within a reproductive season....
Results of a study of spatial and temporal utilization of a tidal river estuary by hatchery and wild juvenile salmonids
(Oncorhynchus spp. and Salmo spp,), of overlap in food habits of hatchery and wild juvenile salmonids, and of size and relative
abundance of associated fish species are reported in this...
Mortality due to infectious diseases is seldom reported in the Greater Sage-Grouse (Centrocercus urophasianus). A case of necrotic enteritis associated with Clostridium perfringens type A is described in a free-ranging adult male sage-grouse in eastern Oregon. Clostridial enteritis is known to cause outbreaks of mortality in various domestic and wild...
The ³²P material balance method for measuring periphyton production and grazing rates on periphyton in streams developed by Elwood and Nelson (1972) was evaluated by laboratory and field experiments. Three basic assumptions of the method were examined: 1) sloughing of periphyton from substrates is negligible, 2) sorption of ³²P onto...
In this study an analysis of the commercial fishery of the Loreto Region, with emphasis on the fishery fleet of Iquitos, Amazon Basin, Peru, is presented. There is evidence of a progressive replacement of large species by smaller, more productive and lower value species in the landing of the commercial...
Methods and utility of age determination of yellowtail rockfish
(Sebastes flavidus), canary rockfish (Sebastes pinniger), and black
rockfish (Sebastes melanops) collected off Oregon during 1972 to
1975 are discussed. Structures compared on the basis of the reproducibility
of counts of annuli (consistency of readings) were the anal fin
pterygiophore, opercle,...
A technique that uses hypotonic lysis of erythrocytes was optimized for the purification of leukocytes from the peripheral blood and anterior kidney (pronephros) of rainbow trout Oncorhynchus mykiss. Comparisons of initial blood dilution (1:2, 1:4, and 1:6) and the time of exposure to hypotonic conditions (10, 20, and 40 s)...
The goal of this project was to estimate the total annual cost of salmon recovery efforts throughout the Columbia River Basin from all stakeholders, including direct and indirect costs. How much is spent on salmon recovery efforts each year in the Columbia River Basin? Depending on who you ask, you...