Long-term data sets that quantitatively confirm basic ecological theory are rare for field
populations. Highly variable recruitment often causes wide temporal variation in population
age distribution and basic theory for adaptive sex ratio often predicts ‘sex ratio tracking’ to
match the fluctuating age distribution. Using sex-changing shrimp as a model...
There is increasing evidence that aging is affected by biological (circadian) clocks – the internal mechanisms that coordinate daily changes in gene expression, physiological functions and behavior with external day/night cycles. Recent data suggest that disruption of the mammalian circadian clock results in accelerated aging and increased age‐related pathologies such...
The Orang Asli are the first people of the Malayo-Thai Peninsula. The first edition of the Orang Asli biomedical bibliography was appended in a book; the second edition was part of a general bibliography on Orang Asli. This third edition includes more recent studies but is also timely because Orang...
Batrachochytrium dendrobatidis (hereafter Batrachochytrium), a fungal pathogen of amphibians, causes the disease chytridiomycosis which is responsible for unprecedented population declines and extinctions globally. Host defenses against chytridiomycosis include cutaneous symbiotic bacteria and anti-microbial peptides, and proposed treatment measures include use of fungicides and bioaugmentation. Efforts to eradicate the fungus from...
In marine ecosystems, rising atmospheric CO2 and climate change are associated with concurrent shifts in temperature, circulation, stratification, nutrient input, oxygen content, and ocean acidification, with potentially wideranging biological effects. Population-level shifts are occurring because of physiological intolerance to new environments, altered dispersal patterns, and changes in species interactions. Together...
1. Ecological communities can be relatively stable for long periods of time, and then, often as a result of disturbance, transition rapidly to a novel state. When communities fail to recover to pre-disturbance configurations, they are said to have experienced a regime shift or to be in an alternative stable state....
The phylogeny of ground beetles of supertribe Trechitae is inferred using DNA sequences of genes that code for 28S ribosomal RNA, 18S ribosomal RNA, and wingless. Within the outgroups, austral psydrines are inferred to be monophyletic, and separate from the three genera of true Psydrina (Psydrus, Nomius, Laccocenus); the austral...
Experimental manipulations of streamflow have been used globally in recent decades to mitigate the impacts of dam operations on river systems. Rivers are challenging subjects for experimentation, because they are open systems that cannot be isolated from their social context. We identify principles to address the challenges of conducting effective...
Through bottom–up inputs and larval transport, benthic–pelagic links can have an important effect on benthic community structure. Recent work on community structure of northeast Pacific rocky shores has focused on latitudinal differences in recruitment of intertidal invertebrates as a driver of variation in community structure. Recruitment differences are associated with...
Silica bodies in short cell epidermal leaf cells of the Early Cretaceous Programinis laminatus (Poales) in Burmese amber are characterized. The great majority are rondels and elongated quadrates aligned horizontally in relation to the leaf axis. Rondel types include circular, elliptical, oblong, long and short forms. Quadrate types include short...
The present work shows predatory behavior of the social orb-weaver spider, Geratonephila burmanica n. gen., n. sp. (Araneae: Nephilidae) against a parasitic wasp, Cascoscelio incassa n. gen., n. sp., (Hymenoptera: Platygasteridae) in Early Cretaceous Burmese amber. An adult male and juvenile of Geratonephila burmanica n. gen., n. sp. in the...
Paleorhodococcus dominicanus n. gen., n sp. (Actinobacteria) is described from a fecal droplet of Triatoma dominicana (Hemiptera: Reduviidae: Triatominae) in Dominican amber. The fossil can be distinguished from most extant species of the closely related extant genus Rhodococcus Zopf, 1891 by its spherical cocci forming substrate filaments with elementary branching,...
In many animal species, males direct more intense courtship towards females they have not previously encountered,
than towards females with which they have previously mated. To test the factors responsible for this "Coolidge Effect", we need
studies on a wide range of taxa – including those with mating systems in...
Adults and nymphs of a new genus and species of the family Macrochelidae are described from detritus cavities of the leafcutting ant, Atta texana. This new species is notable in having peritremes with no posterior loop, a series of small subterminal teeth on the fixed cheliceral digit rather than the...
Filter-feeding invertebrates consume phytoplankton and detritus and therefore serve as important mediators of the exchange of materials from nearshore pelagic to intertidal benthic ecosystems. Here, we evaluated the linkages between nearshore and intertidal systems on temperate rocky reefs on the coasts of Oregon, USA, and New Zealand’s South Island. We...
Two new species of cicada hatchlings in Burmese and Dominican amber are described as Novicicada burmanica n. gen., n. sp. and N. youngi n. gen., n. sp. in the new collective genus Novicicada n. gen. (Hemiptera: Cicadidae). Diagnostic characters of the new genus are an elongate, flattened body, all antennomeres...
A few historical reports exist on the Orang Asli, the indigenous people of the Malay Peninsula.1 Several focus on the Orang Asli before British rule began in the mid-19th century or after Malaya’s independence in 1957. Reports focusing on the colonial period tend to concentrate on official policies, the Communist...
Background: It is rare to find terrestrial nematode lineages parasitizing arthropods inhabiting the intertidal or littoral zone of the oceans. During an ecological study along the Oregon dunes, an allantonematid nematode
(Tylenchomorpha: Allantonematidae) was discovered parasitizing the intertidal shore bug, Saldula laticollis (Reuter)
(Hemiptera: Saldidae). This shore bug is adapted...
Circadian clocks maintain temporal homeostasis by generating daily output rhythms in molecular, cellular, and physiological functions. Output rhythms, such as sleep/wake cycles and hormonal fluctuations, tend to deteriorate during aging in humans, rodents, and fruit flies. However, it is not clear whether this decay is caused by defects in the...
Field and laboratory observations of feeding by invasive Pacific red lionfish Pterois volitans were conducted during June through August of 2008, 2009 and 2010 near Lee Stocking Island, Bahamas. Observations of this invasive marine predator revealed a previously undocumented piscivorous behavior. While slowly approaching prey fish, lionfish produce jets of...
The atrypid brachiopod Strophatrypa skaflestadi gen. et sp. nov. occurs in unnamed upper Silurian strata exposed near the town of Hoonah on northeast Chichagof Island, Southeast Alaska. The new genus represents the first strophic atrypoid with many characters otherwise similar to those of the Atrypidae. Although this genus is known...
Pan et al. claim that our results actually support a strong linear positive relationship between productivity and richness, whereas Fridley et al. contend that the data support a strong humped relationship. These responses illustrate how preoccupation with bivariate patterns distracts from a deeper understanding of the multivariate mechanisms that control...
Organisms eating each other are only one of many types of well documented and important interactions among species. Other such types include habitat modification, predator interference and facilitation. However, ecological network research has been typically limited to either pure food webs or to networks of only a few (<3) interaction...
Studies of consumer-resource interactions suggest that individual diet specialisation is empirically widespread and theoretically important to the organisation and dynamics of populations and communities. We used weighted networks to analyze the resource use by sea otters, testing three alternative models for how individual diet specialisation may arise. As expected, individual...
In the competition to acquire mates, environmental factors can be important in determining the relative quality of an individual. These aspects of quality are often conveyed through signals used for mate assessment by the most energetically-invested sex. In red-backed salamanders, Plethodon cinereus, chemical signals communicate a surprising amount of information,...
With many ecosystems now supporting multiple nonnative species from different trophic levels, it can be challenging to disentangle the net effects of invaders within a community context. Here, we combined wetland surveys with a mesocosm experiment to examine the individual and combined effects of nonnative fish predators and nonnative bullfrogs...
Predators sometimes provide biotic resistance against invasions by nonnative prey. Understanding and predicting the strength of biotic resistance remains a key challenge in invasion biology. A predator's functional response to nonnative prey may predict whether a predator can provide biotic resistance against nonnative prey at different prey densities. Surprisingly, functional...
The effects of exotic species invasions on biodiversity vary with spatial scale, and documentation of local-scale changes in biodiversity following invasion is generally lacking. Coupling long-term observations of local community dynamics with experiments to determine the role played by exotic species in recruitment limitation of native species would inform both...
The history of entomopathogenic nematology is briefly reviewed. Topic selections include early descriptions of members
of Steinernema and Heterorhabditis, how only morphology was originally used to distinguish between the species; descriptions of the
symbiotic bacteria and elucidating their role in the nematode- insect complex, including antibiotic properties, phase variants, and...
The symbiosis between cnidarians (e.g., corals or sea anemones) and intracellular dinoflagellate algae of the genus Symbiodinium is of immense ecological importance. In particular, this symbiosis promotes the growth and survival of reef corals in nutrient-poor tropical waters; indeed, coral reefs could not exist without this symbiosis. However, our fundamental...
A Sebastes-specific complementary DNA (cDNA) microarray was developed to identify potential biomarkers involved in the capture stress and recovery of Sebastes species if they are assisted in returning to their original depth of capture following barotrauma. Black rockfish Sebastes melanops were exposed to simulated decompression from 450 kPa (c. 35...
We explored whether anti-predator behavior and intrinsic growth are co-evolved traits in 3 co-occurring juvenile flatfish species: English sole Pleuronectes vetulus, Pacific halibut Hippoglossus stenolepis and northern rock sole Lepidopsetta polyxystra. English sole are risk prone, adopting behavior that renders them more vulnerable to predation, while northern rock sole are...
Disturbance regimes differ in type, magnitude, and frequency, but few field experiments have considered compounded effects of disturbance. In this study, we characterized gap recovery after complete removal of eelgrass (Zostera marina) in Willapa Bay, Washington, USA. In separate experiments, we imposed two disturbance types – shoot damage and shoot...
The importance of large breeding individuals for maintaining the health of marine fish and invertebrate populations has long been recognized. Unfortunately, decades of human harvesting that preferentially remove larger individuals have led to drastic reductions in body sizes of many of these species. Such size-selective harvesting is particularly worrisome for...
The ocean plays a critical role in supporting human well-being, from providing food, livelihoods and recreational opportunities to regulating the global climate. Sustainable management aimed at maintaining the flow of a broad range of benefits from the ocean requires a comprehensive and quantitative method to measure and monitor the health...
The ecologically and socio-economically important marine ecosystems of Europe are facing severe threats from a variety of human impacts. To mitigate and potentially reverse some of these impacts, the European Union (EU) has mandated the implementation of the Marine Strategy Framework Directive (MSFD) in order to achieve Good Environmental Status...
This study compares percent cover of benthic organisms at the species level at Pearl and Hermes
Atoll (PHA), the largest atoll in the Northwestern Hawaiian Islands, in order to determine 1) the
degree of difference among sites, 2) whether wave exposure zones explain observed patterns in
benthic community structure, and...
Many declining and commercially important populations are supplemented with captive-born individuals that are intentionally released into the wild. These supplementation programs often create large numbers of offspring from relatively few breeding adults, which can have substantial population-level effects. We examined the genetic effects of supplementation on a wild population of...
Nearly all freshwaters and coastal zones of the US are degraded from inputs of excess reactive nitrogen (Nr), sources of which are runoff, atmospheric N deposition, and imported food and feed. Some major adverse effects include harmful algal blooms, hypoxia of fresh and coastal waters, ocean acidification, long-term harm to...
Intraspecific life history attributes of growth, survival, and reproduction can vary in
response to changes in the physical environment. These changes can induce a cascading effect
across trophic levels. In marine systems, shifts in ocean conditions such as warm and cold phases
of ENSO can change primary production in benthic...
Pacific red lionfish Pterois volitans have invaded Atlantic reefs and reached much greater population densities than on native reefs. We hypothesized that lionfish on invaded reefs would (1) experience higher kill rates and thus spend less time hunting, given the naïveté of Atlantic prey, (2) consume a greater variety of...
dependence and regulation of relatively large local populations? If so, what are the causative mechanisms and their implications? We conducted an eight-year multigeneration study of population dynamics of bicolor damselfish (Stegastes partitus) inhabiting four large coral reefs in the Bahamas. After a four-year baseline period, it was clear that two...
Seagrasses and bivalves co-occur worldwide, and each plays a role in the structure, function, and services of coastal ecosystems. While seagrasses are declining, bivalve aquaculture is expanding, and impacts from culture practices, as opposed to the cultured organisms themselves, need to be distinguished. In 2 experiments, we tested the effects...
Animals must manage interactions with beneficial as well as detrimental microbes. Immunity therefore includes strategies for both resistance to and tolerance of microbial invaders. Transforming growth factor beta (TGFβ) cytokines have many functions in animals including a tolerance-promoting (tolerogenic) role in immunity in vertebrates. TGFβ pathways are present in basal...
Floods are a key component of the ecology and management of riverine
ecosystems around the globe, but it is not clear whether floods have predictable effects on
organisms that can allow us to generalize across regions and continents. To address this, we
conducted a global-scale meta-analysis to investigate effects of...
Bembidion (Sloanephila) tahitiense, sp. nov., is described from Mont Mauru, an isolated massif of Tahiti Nui volcano. Based upon evidence from seven genes (four nuclear protein-coding, one mitochondrial protein-coding, two nuclear ribosomal), its sister group is the Australian B. jacksoniense Guérin-Méneville, with which it shares a synapomorphic spur on the...
Background: The owl limpet (Lottia gigantea) is an ectothermic invertebrate that inhabits
the rocky intertidal zone where it territorially defends home ranges and grazes algae growing
on the rocks. Among endothermic species, home range scales isometrically with body mass.
Hypothesis: Home range area scales isometrically (scaling exponent ∼1.0) across individuals...
The recent irruption of Pacific red lionfish (Pterois volitans) on Caribbean and Atlantic coral reefs could prove to be one of the most damaging marine invasions to date. Invasive lionfish are reaching densities much higher than those reported from their native range, and they have a strong negative effect on...
Benefits humans rely on from the ocean - marine ecosystem services - are increasingly vulnerable under future climate. This paper reviews how three valued services have, and will continue to, shift under climate change: (1) capture fisheries, (2) food from aquaculture, and (3) protection from coastal hazards such as storms...
Coastal lagoons are very heterogeneous systems covering a wide range of physiographical and hydrological characteristics. The hypothesis of the present investigation was to test physiographical and hydrological characteristics of coastal lagoons affecting their physico-chemical properties and their buffer capacity against nutrient enrichment. We compared data collected during a whole annual...
A new genus and species of chrysomeline, Stenaspidiotus microptilus, n. gen., n. sp., (Coleoptera: Chrysomelidae: Chrysomelinae) is described from Dominican amber. Diagnostic characters include an elongate, flattened body; small eyes; a narrow, long pronotum with a width/length ratio of 1.6, an irregular pronotal surface with marginated lateral edges, distinct humeral...
Parasite distributions fundamentally depend on the distributions of their hosts but may be more restricted than their hosts. Host-parasite symbioses tend to be spatially aggregated, and widely distributed host-parasite relationships are rare. Here, we combine field observations with published collection data to document the current known distribution of the nematode,...
A new genus and species of bostrichid, Discoclavata dominicana n. gen., n. sp., (Coleoptera: Bostrichidae) and a new genus and species of eucnemid, Lissantauga epicrana n. gen., n. sp. (Coleoptera: Eucnemidae) are described from Dominican amber. Diagnostic characters of Discoclavata dominicana include an extended body, strongly hypognathous head, asparate dorsal...
A new genus and species of megaridid, Minysporops dominicanus gen. n., sp. n. (Hemiptera: Megarididae), is described from Dominican amber. Diagnostic characters include: Minute (under 2.00 mm), glabrous, nearly round body; declivitous flat-topped head; eyes constricted near middle, with dorsal eye shields; ocelli ovoid-elliptical; antennae 4-segmented, setose; rostrum 4- segmented;...
Hypoxia is increasing in coastal zones worldwide, with acute effects on demersal fish and benthic invertebrate communities in shallow coastal and estuarine habitats. Less studied are the effects of hypoxia on planktonic larvae of open coastal habitats. Climate change projections suggest intensified hypoxia in open coast upwelling systems, such as...
As resource management efforts move towards more comprehensive approaches that spin multiple sectors and stakeholder groups, decision makers are faced with the challenge of deciding how important each group is, and how much weight their concerns should have, when making decisions. These decisions must be made transparently if they are...
Motivation: The goal of any parentage analysis is to identify as many parent-offspring relationships as possible, while minimizing incorrect assignments. Existing methods can achieve these ends, but require additional information in the form of demographic data, thousands of markers, and/or estimates of genotyping error rates. For many non-model systems, it...
Metamorphosis is often characterized by profound changes in morphology and physiology that can affect the dynamics of species interactions. For example, the interaction between a pathogen and its host may differ depending on the life stage of the host or pathogen. One pathogen that infects hosts with complex life cycles...
Development of protocols and media for culturing immune cells from marine invertebrates has not kept pace with advancements in mammalian immune cell culture, the latter having been driven by the need to understand the causes of and develop therapies for human and animal diseases. However, expansion of the aquaculture industry...
Seasonal polyphenism demonstrates an organism's ability to respond to predictable environmental variation with alternative phenotypes, each presumably better suited to its respective environment. However, the molecular mechanisms linking environmental variation to alternative phenotypes via shifts in development remain relatively unknown. Here we investigate temporal gene expression variation in the seasonally...
We explored the relationship between relaxed selection, oxidative stress, and spontaneous mutation in a set of mutation-accumulation (MA) lines of the nematode Caenorhabditis elegans and in their common ancestor. We measured steady-state levels of free radicals and oxidatively damaged guanosine nucleosides in the somatic tissues of five MA lines for...
The “9th Okazaki Biology Conference: Marine Biology II” held at the National Institute for Basic Biology (NIBB) in
Okazaki, Japan and at the Okinawa Institute of Science and Technology (OIST) in Okinawa, Japan (14–19 October
2012) bridged the fields of EvoDevo, symbiosis and coral reef ecology.
Direct demographic density dependence is necessary for population regulation and is a central concept in ecology, yet has not been studied in many invasive species, including any invasive marine fish. The red lionfish (Pterois volitans) is an invasive predatory marine fish that is undergoing exponential population growth throughout the tropical...
The Myristicaceae is a member of the early diverging angiosperm order Magnoliales, however the family is poorly represented by fossil collections. We describe Virola dominicana sp. nov. (Myristicaceae), the first record of fossilized Myristicaceae flowers, from mid-Tertiary (45-15 mya) Dominican amber. The description is based on 24 male flowers in...
The intermittent upwelling hypothesis (IUH) predicts that the strength of
ecological subsidies, organismal growth responses, and species interactions will vary
unimodally along a gradient of upwelling from persistent downwelling to persistent upwelling,
with maximal levels at an intermediate or ‘‘intermittent’’ state of upwelling. To test this model,
we employed the...
Gynodioecy is a sexual system wherein females coexist with hermaphrodites. It is of interest
not only because male-sterile plants are advantageous in plant breeding but also because it can be a crucial
step in the evolutionary transition to entirely separate sexes (dioecy) from a hermaphroditic ancestor. The
gynodioecious diploid wild...
The proliferation of efficient fishing practices has promoted the depletion of
commercial stocks around the world and caused significant collateral damage to marine
habitats. Recent empirical studies have shown that marine reserves can play an important role
in reversing these effects. Equilibrium metapopulation models predict that networks of marine
reserves...
For the past several decades, amphibian populations have been decreasing
around the globe at an unprecedented rate. Batrachochytrium dendrobatidis (Bd), the fungal
pathogen that causes chytridiomycosis in amphibians, is contributing to amphibian declines.
Natural and anthropogenic environmental factors are hypothesized to contribute to these
declines by reducing the immunocompetence of...
Alarista succina gen. et sp. nov. (Poaceae) is described from a single floret preserved in amber of Tertiary age originating from the Dominican Republic. The new genus is characterized by 1) a narrow winged lemma awn, 2) numerous (as many as 17) lemma nerves, 3) a lengthy rachilla internode (implying...
Background: The identification of the loci and specific alleles underlying variation in quantitative traits is an important goal for evolutionary biologists and breeders. Despite major advancements in genomics technology, moving from QTL to causal alleles remains a major challenge in genetics research. Near-isogenic lines are the ideal raw material for...
What do you say when you have only a minute to explain to a municipal official why keeping track of the number of bird species found in a park may help make decisions about park management? Talk of significant differences among treatments or testing theory will likely meet with glazed...
The Pacific red lionfish has recently invaded Western Atlantic and Caribbean coral reefs, and may become one of the most ecologically harmful marine fish introductions to date. Lionfish possess a broad suite of traits that makes them particularly successful invaders and strong negative interactors with native fauna, including defensive venomous...
Species invasions have a range of negative effects on recipient ecosystems, and many occur at a scale and magnitude that preclude complete eradication. When complete extirpation is unlikely with available management resources, an effective strategy may be to suppress invasive populations below levels predicted to cause undesirable ecological change. We...
A wide variety of organisms show morphologically plastic responses to environmental
stressors but in general these changes are not reversible. Though less common, reversible
morphological structures are shown by a range of species in response to changes in predators,
competitors, or food. Theoretical analysis indicates that reversible plasticity increases fitness...
Greater scientific knowledge, changing societal values, and legislative mandates have emphasized the importance
of implementing large-scale flow experiments (FEs) downstream of dams. We provide the first global assessment
of FEs to evaluate their success in advancing science and informing management decisions. Systematic
review of 113 FEs across 20 countries revealed...
Anthropogenic impacts are increasingly affecting the world’s oceans. Networks of marine protected areas (MPAs) provide an
option for increasing the ecological and economic benefits often provided by single MPAs. It is vital to empirically assess the
effects of MPA networks and to prioritize the monitoring data necessary to explain those...
Biodiversity losses are occurring worldwide due to a combination of stressors. For example, by one estimate, 40% of amphibian species are vulnerable to extinction, and disease is one threat to amphibian populations. The emerging infectious disease chytridiomycosis, caused by the aquatic fungus Batrachochytrium dendrobatidis (Bd), is a contributor to amphibian...
Cnidarians, such as corals and sea anemones serve as hosts to a variety of organisms including symbiotic dinoflagellates, bacteria, virus, and apicomplexans. As corals are vital to the health and productivity of the reef ecosystem it is important to understand how these organisms interact with each component of the holobiont....
Dislodged macroalgae and seagrasses, also known as marine wrack, frequently wash into coastal ecosystems from the ocean and are potentially important ecological resources for biological communities. These!nutrient and organic matter subsidies may be especially important on sandy beaches, where little in situ primary productivity exists for higher trophic levels. To...
Symbiotic relationships between cnidarians and dinoflagellates within the genus
Symbiodinium are critically important for the success of coral reefs. These symbionts
provide their hosts with photosynthetically-fixed carbon in exchange for nutrients
and shelter. Symbiodinium is a phylogenetically diverse genus that is often typed by
sequencing the ribosomal internal transcribed spacer...
Releasing hatchery reared salmon and steelhead to supplement threatened and endangered populations is a widely used conservation tool. One issue with this strategy is hatchery fish have lower reproductive fitness than wild fish when spawning in the wild. One of the drivers of fitness loss in steelhead is adaptation to...
Emerging infectious diseases impact both human and wildlife populations. Infectious agents, in particular the aquatic fungus Batrachochytrium dendrobatidis (chytrid), have an influential role in driving global amphibian population declines. The emergence of the chytrid fungus has aspects of both geographic spread as well as climate shifts altering environmental conditions and...
Ocean Acidification (OA) has emerged as a major threat to marine ecosystems, particularly regarding calcifying organisms. A growing body of literature describing laboratory investigations into pH stress indicates broadly deleterious effects for calcifiers, but responses vary greatly across taxa and can be influenced by variations in other environmental characteristics. Scaling...