Adults and nymphs of a new genus and species of the family Macrochelidae are described from detritus cavities of the leafcutting ant, Atta texana. This new species is notable in having peritremes with no posterior loop, a series of small subterminal teeth on the fixed cheliceral digit rather than the...
Climate change presents multiple stressors that are impacting marine life. As carbon dioxide emissions continue to increase in the atmosphere, atmospheric and sea water temperatures increase. In addition, more carbon dioxide is absorbed into the oceans, reducing pH and aragonite saturation state, resulting in ocean acidification (OA). Tightly coupled with...
Development of protocols and media for culturing immune cells from marine invertebrates has not kept pace with advancements in mammalian immune cell culture, the latter having been driven by the need to understand the causes of and develop therapies for human and animal diseases. However, expansion of the aquaculture industry...
Alarista succina gen. et sp. nov. (Poaceae) is described from a single floret preserved in amber of Tertiary age originating from the Dominican Republic. The new genus is characterized by 1) a narrow winged lemma awn, 2) numerous (as many as 17) lemma nerves, 3) a lengthy rachilla internode (implying...
Earth is experiencing unprecedented biodiversity loss. Amphibians are at the forefront of this biodiversity loss, with species declines estimated to be more severe than those of birds and mammals. Amphibian population declines and extinctions are driven by a number of factors including climate change, habitat destruction, contaminants and disease but...
The ocean plays a critical role in supporting human well-being, from providing food, livelihoods and recreational opportunities to regulating the global climate. Sustainable management aimed at maintaining the flow of a broad range of benefits from the ocean requires a comprehensive and quantitative method to measure and monitor the health...
Climate change is predicted to affect ecosystems, including systems already stressed by human impacts. One ecosystem that is already highly impacted by human land use is the cold headwater stream system of the Pacific Northwest. One method of assessing the function of an ecosystem is by using an indicator species....
A wide variety of organisms show morphologically plastic responses to environmental
stressors but in general these changes are not reversible. Though less common, reversible
morphological structures are shown by a range of species in response to changes in predators,
competitors, or food. Theoretical analysis indicates that reversible plasticity increases fitness...
The importance of large breeding individuals for maintaining the health of marine fish and invertebrate populations has long been recognized. Unfortunately, decades of human harvesting that preferentially remove larger individuals have led to drastic reductions in body sizes of many of these species. Such size-selective harvesting is particularly worrisome for...
Greater scientific knowledge, changing societal values, and legislative mandates have emphasized the importance
of implementing large-scale flow experiments (FEs) downstream of dams. We provide the first global assessment
of FEs to evaluate their success in advancing science and informing management decisions. Systematic
review of 113 FEs across 20 countries revealed...
Ecosystems are shaped by processes occurring and interacting over multiple temporal and spatial scales. Theory suggests such complexity can be simplified by focusing on processes sharing the same scale as the pattern of interest. This scale-dependent approach to studying communities has been challenged by multiscale meta-ecosystem theory, which recognizes that...
Motivation: The goal of any parentage analysis is to identify as many parent-offspring relationships as possible, while minimizing incorrect assignments. Existing methods can achieve these ends, but require additional information in the form of demographic data, thousands of markers, and/or estimates of genotyping error rates. For many non-model systems, it...
Although only a minority of introduced species become established and have noticeable consequences in their new communities, some can displace native species, alter food webs, and cause local extinctions. Studying these invasive species can provide new insights into basic ecological questions as well as inform management strategies. Pacific lionfish (Pterois...
Fever responses to an immune challenge have been studied in endothermic creatures, but studies of the equivalence is lacking in ectotherms. In this study, heterophil counts were shown to be significantly higher in individuals immune challenged with LPS when compared to a control group. This is indicative of an innate...
Models of the Fisher‐Lande process (FLP) have been used successfully to explore many aspects of evolution by sexual selection. Despite this success, quantitative tests of these models using data from sexual radiations are rare. Consequently, we do not know whether realistic versions of the FLP can account for the extent...
Diet variation among individuals within populations is widespread. Often diet differences among individuals are attributable to obvious differences among individuals such as age, sex, or morphology. However, growing evidence suggests that individual diet variation is also common among seemingly identical individuals within populations. This phenomenon has been termed individual diet...
As global atmospheric carbon emissions continue to rise, scientists and land managers are increasingly looking to natural ecosystems to sequester and store carbon to buffer the impacts of climate change. Despite their small geographic size, many coastal ecosystems such as salt marshes, seagrass meadows, and mangroves sequester large amounts of...
The symbiosis between cnidarians (e.g., corals or sea anemones) and intracellular dinoflagellate algae of the genus Symbiodinium is of immense ecological importance. In particular, this symbiosis promotes the growth and survival of reef corals in nutrient-poor tropical waters; indeed, coral reefs could not exist without this symbiosis. However, our fundamental...
Cnidarians and their symbiotic dinoflagellates form a productive mutualism that shapes marine environments. In this symbiosis, dinoflagellate species from the family Symbiodiniacea reside within cnidarian host gastrodermal cells and provide the host with photosynthetically fixed carbon in exchange for host metabolites. This nutritional exchange allows both partners to thrive in...
Coral reefs have become extremely vulnerable to rising ocean temperatures, with mass bleaching events increasing in frequency and severity. If bleaching events persist annually, models predict that more than 90% of reef species will face long-term degradation. However, recent evidence has shown that corals may be able to thermally acclimate...
The multifaceted role of the environment in regulating the structure and dynamics of biological communities has long fascinated ecologists and motivated much debate and research. Now, in a time of accelerated global changes due to human impacts, the need to understand how the environment shapes communities has gained new urgency....
The Harderian gland is a large cephalic gland present in most groups of terrestrial vertebrates. Although the Harderian gland has been the focus of numerous studies for more than 300 years, its physiological function has remained largely unresolved. Harderian gland secretions are diverse among different taxa, and many putative functions...
Nutrients play a large role in sustaining the symbiotic relationship between the algae and host sea anemone. The endosymbiotic algae provides the host with fixed nitrogen, sugars, and inorganic food sources, while the host provides the algae with shelter and nitrogenous waste. If the anemone does not receive the proper...
In marine ecosystems, rising atmospheric CO2 and climate change are associated with concurrent shifts in temperature, circulation, stratification, nutrient input, oxygen content, and ocean acidification, with potentially wideranging biological effects. Population-level shifts are occurring because of physiological intolerance to new environments, altered dispersal patterns, and changes in species interactions. Together...
Biological invasions and climate change represent two preeminent threats to ecological communities and biodiversity, altering the distribution and abundance of species, disrupting existing species interactions and forming unprecedented ones, and creating novel ecological communities. Many of the most successful invasive species are also ecosystem engineers, species that physically modify the...
Ecological communities are connected in space and time through the transfer of energy, materials, and organisms, together known as ecological subsidies. These ecological subsidies can have substantial effects on community structure, function, and services, especially when the connections are between communities with contrasting productivity. At the ocean-land interface, low productivity...
Managing multiple ecosystem services (ESs) across landscapes presents a central challenge for ecosystem-based management, because services often exhibit spatiotemporal variation and weak associations with co-occurring ESs. Further focus on the mechanistic relationships among ESs and their underlying biophysical processes provides greater insight into the causes of variation and covariation among...
Bembidion (Sloanephila) tahitiense, sp. nov., is described from Mont Mauru, an isolated massif of Tahiti Nui volcano. Based upon evidence from seven genes (four nuclear protein-coding, one mitochondrial protein-coding, two nuclear ribosomal), its sister group is the Australian B. jacksoniense Guérin-Méneville, with which it shares a synapomorphic spur on the...
A central theme of ecology is determining factors that influence species distributions. Within aquatic ecology, species present in flowing waters are primarily influenced by the natural flow patterns of the stream (natural flow regime paradigm) while explanations of species present in standing waters are further divided by habitat type. To...
With many ecosystems now supporting multiple nonnative species from different trophic levels, it can be challenging to disentangle the net effects of invaders within a community context. Here, we combined wetland surveys with a mesocosm experiment to examine the individual and combined effects of nonnative fish predators and nonnative bullfrogs...
A major goal of the Partnership for Interdisciplinary Studies of Coastal Oceans (PISCO) has been to understand the impacts of climate change and variability on the coastal ecosystems of the inner shelf of the California Current Large Marine System in particular, and other marine and even nonmarine systems more generally....
Pacific red lionfish Pterois volitans have invaded Atlantic reefs and reached much greater population densities than on native reefs. We hypothesized that lionfish on invaded reefs would (1) experience higher kill rates and thus spend less time hunting, given the naïveté of Atlantic prey, (2) consume a greater variety of...
Transcriptome and genome data from twenty stony coral species and a selection of reference bilaterians were studied to elucidate coral evolutionary history. We identified genes that encode the proteins responsible for the precipitation and aggregation of the aragonite skeleton on which the organisms live, and revealed a network of environmental...
Emerging infectious diseases impact both human and wildlife populations. Infectious agents, in particular the aquatic fungus Batrachochytrium dendrobatidis (chytrid), have an influential role in driving global amphibian population declines. The emergence of the chytrid fungus has aspects of both geographic spread as well as climate shifts altering environmental conditions and...
Twenty years ago, the creation of a new scientific program, the Partnership for Interdisciplinary Studies of Coastal Oceans (PISCO), funded by the Packard Foundation, provided the opportunity to integrate—from the outset—research, monitoring, and outreach to the public, policymakers, and managers. PISCO’s outreach efforts were initially focused primarily on sharing scientific...
Experimental evolution is a tool that allows us to measure changes in populations over time in controlled, novel environments. Microbial evolution experiments use cryopreservation – storage at -80°C in glycerol media – to archive experimental populations. Research with Escherichia coli suggests that cryopreservation conditions can affect cell viability and that...
A few historical reports exist on the Orang Asli, the indigenous people of the Malay Peninsula.1 Several focus on the Orang Asli before British rule began in the mid-19th century or after Malaya’s independence in 1957. Reports focusing on the colonial period tend to concentrate on official policies, the Communist...
Anthropogenic climate change is threatening biodiversity as I currently understand it. There is now a large body of work highlighting species responses, globally, to this threat. Importantly, responses at the species level emerge from responses at lower levels of biological organization (individuals and populations) across a species’ geographic range. For...
Hypoxia is increasing in coastal zones worldwide, with acute effects on demersal fish and benthic invertebrate communities in shallow coastal and estuarine habitats. Less studied are the effects of hypoxia on planktonic larvae of open coastal habitats. Climate change projections suggest intensified hypoxia in open coast upwelling systems, such as...
Hydrology is the main environmental filter in aquatic ecosystems and may result in shared tolerances and functional traits among species in disparate ecosystems. We analyzed the associations between taxonomic and functional facets of diversity within aquatic ecosystems (ponds vs. streams) across a hydroperiod gradient (1–365 d) to untangle the hydrologic...
Carbon dioxide emissions greatly affect the carbon chemistry mechanisms within the ocean. Carbon absorbed by the ocean, drops the pH level and creates an environment that is acidic. Acidic conditions prevent calcification mechanisms in coralline algae, and hinder their ability to establish within the intertidal. Coralline algae display structural relevance...
Schistosomiasis is a neglected tropical disease caused by parasitic trematodes in the genus Schistosoma. 200 million people are infected with schistosomes. Schistosomiasis causes acute and chronic disease, and may lead to death in chronic infections. Schistosomes have a complex life cycle that requires passage through a snail intermediate host. Understanding...
Data on green crabs collected and trapped from Makah Bay to Coos Bay in 2017.
Data included: Estuary, site, date, sex, carapace width, weight, molt state, estimated year class, missing limbs, collection method and collector.
Data on green crabs collected and trapped from Makah Bay to Coos Bay in 2018. Data included: Estuary, site, date, sex, carapace width, weight, molt state, estimated year class, missing limbs, collection method, collector and pheromone treatment.
European green crab, Carcinus maenas, trapped and collected in coastal Oregon and Washington coastal estuaries during the 2019. Data for individual crabs include: estuary, site, date of collection, sex, carapace width, weight, molt stage (color of abdomen), missing limbs, estimated year class, method of collection, and name of collector.
Species are one of the foundational units upon which entire fields of scientific inquiry are built. Discovering and documenting the planet’s biodiversity remains one of the grand challenges of science. A proper conceptualization of species provides a critical framework for diverse fields such as biophysics, biochemistry, agriculture and pharmacology, and...
dependence and regulation of relatively large local populations? If so, what are the causative mechanisms and their implications? We conducted an eight-year multigeneration study of population dynamics of bicolor damselfish (Stegastes partitus) inhabiting four large coral reefs in the Bahamas. After a four-year baseline period, it was clear that two...
Seagrasses and bivalves co-occur worldwide, and each plays a role in the structure, function, and services of coastal ecosystems. While seagrasses are declining, bivalve aquaculture is expanding, and impacts from culture practices, as opposed to the cultured organisms themselves, need to be distinguished. In 2 experiments, we tested the effects...