Index Catalog // ScholarsArchive@OSU

Roles of brca2 (fancd1) in Oocyte Nuclear Architecture, Gametogenesis, Gonad Tumors, and Genome Stability in Zebrafish

Creator:: Rodriguez-Mari, Adriana, Wilson, Catherine, Titus, Tom A., Canestro, Cristian, BreMiller, Ruth A., Yan, Yi-Lin, Nanda, Indrajit, Johnston, Adam, Kanki, John P., Gray, Erin M., He, Xinjun, Spitsbergen, Jan, Schindler, Detlev, and Postlethwait, John H.
Abstract:: Mild mutations in BRCA2 (FANCD1) cause Fanconi anemia (FA) when homozygous, while severe mutations cause common cancers including breast, ovarian, and prostate cancers when heterozygous. Here we report a zebrafish brca2 insertional mutant that shares phenotypes with human patients and identifies a novel brca2 function in oogenesis. Experiments showed that...
Resource Type:: Article
Full Text:: , Catherine Wilson1, Tom A. Titus1, Cristian Cañestro1¤, Ruth A. BreMiller1, Yi- Lin Yan1, Indrajit Nanda2

Quantifying Carbon Production in Marine Ecosystems Using Expressions of Phytoplankton Physiology

Creator:: Penta, William Bryce
Abstract:: Phytoplankton initiate the marine carbon cycle by fixing carbon dioxide into biologically available compounds. These abundant single celled organisms mediate carbon flux from the atmosphere to the deep ocean and are the base of the marine food web, supplying new carbon to higher trophic levels. Phytoplankton are highly diverse and...
Resource Type:: Dissertation
Full Text:: separated by ocean basin for TARA Oceans.............................................................132

Metagenomics: Microbial diversity through a scratched lens

Creator:: Temperton, Ben and Giovannoni, Stephen J.
Abstract:: Since nucleic acids were first extracted directly from the environment and sequenced, metagenomics has grown to one of the most data-rich and pervasive techniques for understanding the taxonomic and functional diversity of microbial communities. In the last decade, cheaper sequencing has democratized the application of metagenomics and generated billions of...
Resource Type:: Article
Full Text:: 81 (http://www.earthmicrobiome.org/) and Tara Oceans Expedition [34] continue to 82 explore

Impacts of microbial chemical interactions on marine plankton physiology

Creator:: Moore, Eric R.
Abstract:: The bioavailability of chemical compounds in the marine environment fundamentally influences the growth and physiology of microorganisms. Organic and inorganic chemicals that are produced by some marine plankton can be consumed by other plankton for energy production, growth, or to initiate essential physiological processes. Cultures of the diatom Thalassiosira pseudonana,...
Resource Type:: Dissertation
Full Text:: tree of sequences in the TARA Oceans metagenome 107 sequences that were identified to be homologs of

What is killing the corals? Viral and bacterial interrogations using metagenomics and microscopy

Creator:: Soffer, Nitzan
Abstract:: Corals have multiple roles in maintaining ocean health and are some of the world’s most diverse ecosystems. The coral animal is host to a multitude of taxa, including symbiotic dinoflagellate algae, fungi, bacteria, protists, and viruses. Environmental stressors and disease agents can perturb the delicate balance of the coral host...
Resource Type:: Dissertation
Full Text:: USVI. My Hawaii collaborator, Courtney Couch, for my work she did vouch, thanks for the comments on

Multiple Stressors Drive Changes in Coral Microbiome Diversity and Composition Demonstrating the Role of a Bacterial Symbiont in Microbial Community Sensitivity and Resilience

Creator:: Maher, Rebecca L.
Abstract:: On coral reefs, disturbances rarely occur in isolation. Global stressors such as increasing seawater temperature often coincide with local stressors like nutrient pollution. In the face of increasing anthropogenic stress, corals can function as environmental sentinels, although little is known about how multiple stressors interact to disrupt their associated bacterial...
Resource Type:: Dissertation
Full Text:: ............................................................................................. 214 4.1. Three sampling sites included in the Tara expedition around the island of Mo’orea in

Evidence for molecular diversity of Piscirickettsia salmonis

Creator:: Mauel, Michael J.
Resource Type:: Dissertation
Full Text:: . 1984, Couch 1985, Comps 1985; crustacean: Federici et al 1974, Pappalardo and Bonami 1980, Larsson

Chemical and Genetic Investigations of Toxic Freshwater Cyanobacterial Blooms for Improved Monitoring and Understanding of Lake Ecology

Creator:: Collart, Lindsay P.
Abstract:: Toxin production by cyanobacterial harmful algal blooms (cyanoHABs) in freshwater systems has lasting ecological and human impacts. Nutrients, light availability, hydrology, and microbial community composition impact the frequency and intensity of toxic cyanoHABs. Climate change will exacerbate toxic cyanoHABs, making real time and predictive monitoring a vital tool for managing...
Resource Type:: Dissertation
Full Text:: , Teagan Couch, and Preciosa Martinez were the best undergraduate students a graduate student could ever

The Influence of Microbial Communities on Spatiotemporal Elemental Cycling in Coastal Margins Revealed by Community- and Population-level Genomics and Proteomics

Creator:: Kieft, Brandon P.
Abstract:: Biotic and abiotic processes at continent-ocean interfaces cycle a disproportionate mass of carbon and nutrients relative to their global surface area, and microbial activity is a principal determinant of organic and inorganic matter flux in these transition zones. Most studies using modern high-throughput ‘omics techniques to link microorganisms with costal...
Resource Type:: Dissertation

Baculovirus molecular biology, 4th edition

Creator:: Rohrmann, George F.
Abstract:: This is the 4th edition of a book that was initiated with the annotation of the function of all the genes in the most commonly studied baculovirus, AcMNPV. It has been almost six years since I reviewed this literature. As a measure of the research that has occurred over this...
Resource Type:: Book
Full Text:: monodon. Arrows indicated nucleocapsids. From Couch (17). Reproduced with permission of Elsevier Limited

Baculovirus molecular biology, 1st edition

Creator:: Rohrmann, George F.
Abstract:: This book is based on a project to completely annotate what is known about the function of the ~150 genes encoded by the genome of the most commonly investigated baculovirus, AcMNPV. Once the annotation was completed (summarized in Chapter 11), the material was organized into a series of chapters integrating...
Resource Type:: Book
Full Text:: ., 1973. 21: p. 323-4. 9. Couch, J.A., An enzootic nuclear polyhedrosis virus of pink shrimp

Impacts of Environmental Change on a Newly-characterized Symbiosis between a Novel Bacterial Parasite, Genus Aquarickettsia, and the Coral Acropora cervicornis

Creator:: Klinges, J. Grace
Abstract:: Coral reef ecosystems continue to be significantly altered by disease epizootics, but why some host populations remain resistant while others succumb to outbreaks remains unknown. Research across diverse animal and plant host systems has revealed that disease severity is strongly influenced by host genetics and by environmental influences on both...
Resource Type:: Dissertation
Full Text:: aboard the research vessel Tara. I would like to thank the past and current members of the Vega

Harnessing Heterogeneity in Human Gut Microbiome Data

Creator:: Tataru, Christine
Abstract:: The focus of this thesis is to design, characterize, and apply novel computational methods and molecular systems to interrogate heterogeneous human gut microbiome-related phenomena. In Chapter 2, I design, implement, and characterize a method for embedding co-occurrence patterns derived from massive 16s amplicon datasets. I use this method to 1....
Resource Type:: Dissertation

Baculovirus molecular biology, 3rd edition

Creator:: Rohrmann, George F.
Abstract:: This is the third edition of a book that was initiated with the annotation of the function of all the genes in the most commonly studied baculovirus, AcMNPV. The second and third editions involved the update of this information and its integration into chapters covering the major processes central to...
Resource Type:: Book
Full Text:: . From Couch (16). Reproduced with permission of Elsevier Limited via Copyright Clearance Center

Baculovirus molecular biology, 2nd Edition

Creator:: Rohrmann, George F.
Abstract:: This book is based on a project to completely annotate what is known about the function of the ~150 genes encoded by the genome of the most commonly investigated baculovirus, AcMNPV. Once the annotation was completed (summarized in Chapter 12), the material was organized into a series of chapters integrating...
Resource Type:: Book
Full Text:: body of a virus of the pink shrimp, Penaeus monodon. Arrows indicated nucleocapsids. From Couch [16

Expanding Diagnostic Assays for Pseudoloma neurophilia & Description of the Progression of Infection in Adult Zebrafish Populations

Creator:: Schuster, Corbin J.
Abstract:: Pseudoloma neurophilia is the most common pathogen reported in zebrafish (Danio rerio) research facilities and is an important threat to the zebrafish model. This microsporidian parasite can cause clinical disease, but more importantly is a causative agent of non-protocol induced variation in research. Studies utilizing infected zebrafish, could potentially confound...
Resource Type:: Dissertation
Full Text:: glands, and limbs, thus cannot be used in specific questions regarding these tissues (Lin et al. 2016

Pseudoloma neurophilia : progression of infection and transmission characteristics of a microsporidian parasite in a model vertebrate, Danio rerio

Creator:: Sanders, Justin L.
Abstract:: The microsporidian parasite, Pseudoloma neurophilia, is the most commonly diagnosed infectious disease in laboratory populations of the zebrafish, Danio rerio. Infections by P. neurophilia are generally subclinical, however, they can become acute either incidentally or due to experimental immune suppression. Non-protocol induced variation can confound results in laboratory experiments using...
Resource Type:: Dissertation
Full Text:: , and especially Tara, Gavin, and Maeve: this is for you

ScholarsArchive@OSU

Roles of brca2 (fancd1) in Oocyte Nuclear Architecture, Gametogenesis, Gonad Tumors, and Genome Stability in Zebrafish

Quantifying Carbon Production in Marine Ecosystems Using Expressions of Phytoplankton Physiology

Metagenomics: Microbial diversity through a scratched lens

Impacts of microbial chemical interactions on marine plankton physiology

What is killing the corals? Viral and bacterial interrogations using metagenomics and microscopy

Multiple Stressors Drive Changes in Coral Microbiome Diversity and Composition Demonstrating the Role of a Bacterial Symbiont in Microbial Community Sensitivity and Resilience

Evidence for molecular diversity of Piscirickettsia salmonis

Chemical and Genetic Investigations of Toxic Freshwater Cyanobacterial Blooms for Improved Monitoring and Understanding of Lake Ecology

The Influence of Microbial Communities on Spatiotemporal Elemental Cycling in Coastal Margins Revealed by Community- and Population-level Genomics and Proteomics

Baculovirus molecular biology, 4th edition

Baculovirus molecular biology, 1st edition

Impacts of Environmental Change on a Newly-characterized Symbiosis between a Novel Bacterial Parasite, Genus Aquarickettsia, and the Coral Acropora cervicornis

Harnessing Heterogeneity in Human Gut Microbiome Data

Baculovirus molecular biology, 3rd edition

Baculovirus molecular biology, 2nd Edition

Expanding Diagnostic Assays for Pseudoloma neurophilia & Description of the Progression of Infection in Adult Zebrafish Populations

Pseudoloma neurophilia : progression of infection and transmission characteristics of a microsporidian parasite in a model vertebrate, Danio rerio

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