Index Catalog // ScholarsArchive@OSU

Controlling Important Pathogens in Zebrafish (Danio rerio) : Assessing Cryopreservation Survival of Bacteria and Parasites and Clinical Sensitivity of Mycobacterial qPCR Assays

Creator:: Norris, Lauren J.
Abstract:: Zebrafish (Danio rerio) are one of the most commonly used animal models in biomedical research. Zebrafish resource facilities, like the Zebrafish International Resource Center (ZIRC) in Eugene, Oregon, are the main providers and keepers of numerous zebrafish wild-type, mutant, and transgenic lines. Although ZIRC maintains live zebrafish at various life...
Resource Type:: Masters Thesis
Full Text:: AN ABSTRACT OF THE THESIS OF Lauren Jean Norris for the degree of Master of Science in

Novel Experimental Designs and Mathematical Models to Study Fecal Indicator Bacteria Persistence in Surface Water

Creator:: Brooks, Lauren
Abstract:: High counts of fecal indicators, used to signal the potential presence of pathogens associated with untreated waste, result in the classification of water bodies throughout the United States as impaired. Nonpoint sources of unknown origin that contribute to fecal contamination make management of impaired waters challenging, as they are difficult...
Resource Type:: Dissertation
Full Text:: , AND OBJECTIVES Lauren E. Brooks 2 Fecal Contamination, Fecal Indicators

Chromatophores as cell-based biosensors for the detection of chemically and biologically toxic substances

Creator:: Dukovcic, Stephanie R.
Abstract:: Cell-based biosensors are function-based detectors that use the physiological response of a living cell to sense biologically stimulating agents. This emerging technology extends the application of current detection methods by reporting on the toxicity of a sample and the potential to cause disease. Previously, Betta splendens erythrophores have been described...
Resource Type:: Dissertation
Full Text:: E. Trempy Cell-based biosensors are function-based detectors that use the physiological

Bacterial pathogens and associated toxins involved in erythrophore cell aggregation

Creator:: Hutchison, Janine R.
Abstract:: Current detection methods for bacterial contamination rely on structure based detection of proteins and nucleic acids. While these methods are easy to use and reliable, they cannot evaluate the toxicity of a sample and the potential to cause disease. Previously, erythrophore cells derived from Betta splendens had been suggested as...
Resource Type:: Dissertation
Full Text:: : _______________________________________________________________ Janine E. Trempy Current detection methods for bacterial contamination rely on

Impacts of Environmental Change on a Newly-characterized Symbiosis between a Novel Bacterial Parasite, Genus Aquarickettsia, and the Coral Acropora cervicornis

Creator:: Klinges, J. Grace
Abstract:: Coral reef ecosystems continue to be significantly altered by disease epizootics, but why some host populations remain resistant while others succumb to outbreaks remains unknown. Research across diverse animal and plant host systems has revealed that disease severity is strongly influenced by host genetics and by environmental influences on both...
Resource Type:: Dissertation

Unprecedented evidence for high viral abundance and lytic activity in coral reef waters of the South Pacific Ocean

Creator:: Payet, Jérôme P., McMinds, Ryan, Burkepile, Deron E., and Thurber, Rebecca L. Vega
Abstract:: Despite nutrient-depleted conditions, coral reef waters harbor abundant and diverse microbes; as major agents of microbial mortality, viruses are likely to influence microbial processes in these ecosystems. However, little is known about marine viruses in these rapidly changing ecosystems. Herewe examined spatial and short-term temporal variability in marine viral abundance...
Resource Type:: Article
Full Text:: ., McMinds, R., Burkepile, D. E., & Vega Thurber, R. L. (2014). Unprecedented evidence for high viral

Macroalgae Decrease Growth and Alter Microbial Community Structure of the Reef-Building Coral, Porites astreoides

Creator:: Thurber, Rebecca Vega, Burkepile, Deron E., Correa, Adrienne M. S., Thurber, Andrew R., Shantz, Andrew A., Welsh, Rory, Pritchard, Catharine, and Rosales, Stephanie
Abstract:: With the continued and unprecedented decline of coral reefs worldwide, evaluating the factors that contribute to coral demise is of critical importance. As coral cover declines, macroalgae are becoming more common on tropical reefs. Interactions between these macroalgae and corals may alter the coral microbiome, which is thought to play...
Resource Type:: Article
Full Text:: E. Burkepile1, Adrienne M. S. Correa1,2, Andrew R. Thurber3, Andrew A. Shantz1, Rory Welsh1,2

What is killing the corals? Viral and bacterial interrogations using metagenomics and microscopy

Creator:: Soffer, Nitzan
Abstract:: Corals have multiple roles in maintaining ocean health and are some of the world’s most diverse ecosystems. The coral animal is host to a multitude of taxa, including symbiotic dinoflagellate algae, fungi, bacteria, protists, and viruses. Environmental stressors and disease agents can perturb the delicate balance of the coral host...
Resource Type:: Dissertation
Full Text:: Weis, Steve Giovannoni, Roger Ely, Giri N. Deron Burkepile, Lauren Richardson, Josh Voss, and well

Molecular characterization of the MX genes of rainbow trout (Oncorhynchus mykiss)

Creator:: Trobridge, Grant David
Abstract:: The Mx protein family of rainbow trout (Oncorhynchus mykiss) was characterized at the molecular level. With primers derived from a partial sequence of Perch (Perca fluviatis) Mx genomic DNA, a partial rainbow trout Mx genomic DNA sequence was obtained by polymerase chain reaction (PCR) amplification. All salmonid fish investigated contained...
Resource Type:: Dissertation
Full Text:: leucine zipper motifs common to all Mx proteins. Polyclonal antisera generated to an E. coli expressed

Intestinal Lesions and Parasites Associated with Senescence and Prespawn Mortality in Chinook Salmon (Oncorhynchus tshawytscha)

Creator:: Nervino, Stephanie A.
Abstract:: Pre-spawning mortality (PSM) presents a major problem for population recovery of spring Chinook salmon (Oncorhynchus tshawytscha) in the Willamette River basin. In certain reaches and years, PSM has exceeded 90%. Histology has been used as the primary diagnostic method to investigate PSM in the Chinook Salmon, and a collection of...
Resource Type:: Masters Thesis
Full Text:: are severely immunocompromised before they spawn in natal freshwater streams. Thus, E. schreckii

ScholarsArchive@OSU

Controlling Important Pathogens in Zebrafish (Danio rerio) : Assessing Cryopreservation Survival of Bacteria and Parasites and Clinical Sensitivity of Mycobacterial qPCR Assays

Novel Experimental Designs and Mathematical Models to Study Fecal Indicator Bacteria Persistence in Surface Water

Chromatophores as cell-based biosensors for the detection of chemically and biologically toxic substances

Bacterial pathogens and associated toxins involved in erythrophore cell aggregation

Impacts of Environmental Change on a Newly-characterized Symbiosis between a Novel Bacterial Parasite, Genus Aquarickettsia, and the Coral Acropora cervicornis

Unprecedented evidence for high viral abundance and lytic activity in coral reef waters of the South Pacific Ocean

Macroalgae Decrease Growth and Alter Microbial Community Structure of the Reef-Building Coral, Porites astreoides

What is killing the corals? Viral and bacterial interrogations using metagenomics and microscopy

Molecular characterization of the MX genes of rainbow trout (Oncorhynchus mykiss)

Intestinal Lesions and Parasites Associated with Senescence and Prespawn Mortality in Chinook Salmon (Oncorhynchus tshawytscha)

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