Vegetation at the aquatic–terrestrial interface can alter landscape features through its growth and interactions with sediment and fluids. Even similar species may impart different effects due to variation in their interactions and feedbacks with the environment. Consequently, replacement of one engineering species by another can cause significant change in the...
Bodies are often made of repeated units, or serial homologs, that develop using the same core gene regulatory network. Local inputs and modifications to this network allow serial homologs to evolve different morphologies, but currently we do not understand which modifications allow these repeated traits to evolve different levels of...
Cattle grazing and invasion by non-native plant species are globally-ubiquitous changes occurring to plant communities that are likely to reverberate through whole food webs. We used a manipulative field experiment to quantify how arthropod community structure differed in native and non-native California grassland communities in the presence and absence of...
Management of marine ecosystems increasingly demands comprehensive and quantitative assessments of ocean health, but lacks a tool to do so. We applied the recently developed Ocean Health Index to assess ocean health in the relatively data-rich US west coast region. The overall region scored 71 out of 100, with sub-regions...
To examine the influence of forest management on wildlife immunity, the innate immune system of wild deer mice (Peromyscus maniculatus) inhabiting forest plots of different management intensities in the Oregon coast range was measured by bactericidal assay. Bactericidal activity was compared across three management levels, including 40-50 year old forest...
The tropical sea anemone, Aiptasia sp., is a model organism within the phylum cnidaria, a group that includes globally threatened corals which are the bio-engineers of coral reefs.
Aiptasia reproduce both sexually, in a process known as spawning, and asexually, mainly through a process known as pedal laceration. During spawning,...
Most wild animals are concurrently infected with multiple parasite species for most of their lives. These parasite species assemble into rich and diverse communities, with parasites using host tissues for growth and reproduction as well as evolving strategies to evade the host immune system. The net effect of these ecological...
Successful cell division requires proper chromosome movement, including accurate congression to the metaphase plate and proper segregation to spindle poles. Errors that occur in either event can cause chromosome aneuploidy in daughter cells, which may lead to cell death, genetic diseases and cancers (Matson and Stukenberg,2012, Compton, 2000). The force...
The influence of the physical environment on organisms has long been a subject of ecological research. But, the complex drivers of environmental variation, and the multiple scales at which this can occur, make studying this topic a difficult challenge. In rocky intertidal habitats, oceanographic- and climate-scale variability influence benthic communities...
Although it is generally assumed that the intensifying abiotic environment is the primary effect of drought on aquatic organisms, drought-induced top predator extinctions may be an important underlying mechanism. I used manipulative experiments to disentangle the impacts of drying and top predator extinctions on arid-land aquatic invertebrate communities. I then...
For ethical and logistical reasons, population-genetic studies of parasites often rely on the non-invasive sampling of offspring shed from their definitive hosts. However, if the sampled offspring are naturally derived from a small number of parents, then the strong family structure can result in biased population-level estimates of genetic parameters,...
Schistosomiasis afflicts 200 million people and is responsible for 200,000 deaths per year. The infection is caused by a digenean trematode in the genus Schistosoma. The parasite must cycle through both a vertebrate (human) and invertebrate (snail) host to complete the life cycle. My dissertation focuses on the genetic mechanisms...
Background: In Drosophila, male flies require the expression of the male-specific Fruitless protein (FRU[superscript M]) within the
developing pupal and adult nervous system in order to produce male courtship and copulation behaviors. Recent
evidence has shown that specific subsets of FRU[superscript M] neurons are necessary for particular steps of courtship...
Disturbance has both direct and indirect ramifications that can influence species abundance, distribution, and ultimately the diversity found within a community. As a result, we might expect disturbance to play a particularly important role in the ability of non-native species to proliferate outside of their native range. In practice, disturbance...
Emerging infectious diseases are increasing globally and are a threat to human, wildlife, and ecosystem health. The emerging fungal pathogen, Batrachochytrium dendrobatidis (Bd), or amphibian chytrid fungus, is associated with worldwide amphibian population declines and extinctions. Bd has been found on every continent where amphibians exist and has been documented...
Because many coral-reef fishes are observable in situ, are amenable to transplantation, have small home ranges and short generation times, they provide a excellent system to investigate many topics within general ecology, fisheries biology, and conservation biology. The primary goal of this dissertation was to use the coral-reef fishes system...
The causes of the global biodiversity crisis are varied and complex. Anthropogenic threats may act in isolation, or interact additively or synergistically with each other or with natural stressors to affect sensitive taxa. The recent emergence of many infectious diseases in wildlife has brought attention to the role of disease...
Several taxonomic issues in the moth families Erebidae and Noctuidae are addressed for Northwestern North America. Drasteria parallela Crabo & Mustelin and Cycnia oregonensis tristis Crabo in the Erebidae and Eudryas brevipennis bonneville Shepard & Crabo, Resapamea diluvius Crabo, Resapamea angelika Crabo, Resapamea mammuthus Crabo, Fishia nigrescens Hammond & Crabo,...
Remains of parasites in vertebrates are rare from the Mesozoic and Paleozoic. Once most parasites that live in - or pass through - the gastrointestinal tract of vertebrates, fossil feces (coprolites) or even intestinal contents (enterolites) can eventually preserve their remains. Here we announce the discovery of a spiral shark...
A new species of Bembidion (Trichoplataphus Netolitzky) from the Ozark Plateau of Missouri and Arkansas is described (Bembidion ozarkense Maddison and Hildebrandt). It is distinguishable from the closely related species, Bembidion rolandi Fall, by characteristics of the male genitalia, and sequences of the genes cytochrome oxidase I and 28S ribosomal...
We live in an exciting time for biology. Technological advances have made data collection easier and cheaper than we could ever have imagined just 10 years ago. We can now synthesize and analyze large data sets containing genomes, transcriptomes, proteomes, and multivariate phenotypes. At the same time, society's need for...
Based on regional-scale studies, aboveground production and litter decomposition are thought to positively covary, because they are driven by shared biotic and climatic factors. Until now we have been unable to test whether production and decomposition are generally coupled across climatically dissimilar regions, because we lacked replicated data collected within...
Ambient ultraviolet-B radiation can harm amphibian eggs, larvae and adults. However, some amphibians avoid UV-B radiation when given the opportunity. The strawberry poison dart frog, Oophaga pumilio, is diurnal and males vocalize throughout the day in light gaps under forest canopies that expose them to solar radiation. Previous studies have...
Four new species of fossil mermithids (Nematoda: Mermithidae) are described from amber: Heydenius arachnius n. sp. from a spider (Arachnida: Araneae) in Dominican amber, Heydenius phasmatophilus n. sp., from a walking stick (Phasmatodea: Phasmatidae) in Baltic amber, Heydenius podenasae n. sp. from a moth (Lepidoptera) in Baltic amber and Heydenius...
A new species of ground beetle, Bembidion ricei, is described from the Andes mountains of Ecuador east of Quito. It belongs to the georgeballi species group of subgenus Ecuadion, and is most similar to Bembidion georgeballi. A key to the species of the group is provided.
Species composition within ecological assemblages can drive disease dynamics including pathogen invasion, spread, and persistence. In multi-host pathogen systems, interspecific variation in responses to infection creates important context dependency when predicting the outcome of disease. Here, we examine the responses of three sympatric host species to a single fungal pathogen,...
Circadian clocks generate daily rhythms in neuronal, physiological, and metabolic functions. Previous studies in mammals reported daily fluctuations in levels of the major endogenous antioxidant, glutathione (GSH), but the molecular mechanisms that govern such fluctuations remained unknown. To address this question, we used the model species Drosophila, which has a...
Background: The harlequin ladybird, Harmonia axyridis Pallas (Coleoptera: Coccinellidae) is native to central and eastern Asia and was purposely introduced into Europe to control aphids. While it proved to be a good biological control agent, its rapid spread and buildup of large populations made it a nuisance, since it overwinters...
In We have analyzed natural variation in mitochondrial form and function among a set of Caenorhabditis briggsae isolates known to harbor mitochondrial DNA structural variation in the form of a heteroplasmic nad5 gene deletion (nad5 Delta) that correlates negatively with organismal fitness. We performed in vivo quantification of 24 mitochondrial...
Many hope that ocean waves will be a source for clean, safe, reliable and affordable energy, yet wave energy conversion facilities may affect marine ecosystems through a variety of mechanisms, including competition with other human uses. We developed a decision-support tool to assist siting wave energy facilities, which allows the...
Selfish DNA poses a significant challenge to genome stability and organismal fitness in diverse eukaryotic lineages. Although selfish mitochondrial DNA (mtDNA) has known associations with cytoplasmic male sterility in numerous gynodioecious plant species and is manifested as petite mutants in experimental yeast lab populations, examples of selfish mtDNA in animals...
Postcopulatory sexual selection—sperm competition and cryptic female choice—has become a major area of research over the past 40 years. Within this field there are many outstanding questions at every level of analysis, from proximate to ultimate. The fitness consequences for both sexes in the period after copulation and before fertilization...
Most climate change predictions focus on the response of individual species to changing local conditions and ignore species interactions, largely due to the lack of a sound theoretical foundation for how interactions are expected to change with climate and how to incorporate them into climate change models. Much of the...
Whether microevolutionary processes can explain macroevolutionary patterns has long been a matter of contentious debate. The debate has persisted largely because of the challenging task of connecting microevolutionary theory, which examines population-level phenomena on the generation scale, to data collected across larger spatial and temporal scales. My dissertation research broadly...
Molluscan internal defenses rely heavily on circulating hemocytes. In most cases, encounters with large foreign bodies result in recognition by hemocytes followed by spreading of these defense cells over the object’s surface. The resulting encapsulation concentrates the force of the hemocytes’ assault on the foreign object.
B. glabrata snail lines...
Resistance of the snail Biomphalaria glabrata to the trematode Schistosoma mansoni is correlated with allelic variation at copper-zinc superoxide dismutase (sod1). We tested whether there is a fitness cost associated with carrying the most resistant allele in three outbred laboratory populations of snails. These three populations were derived from the...
Understanding the mechanisms that regulate local species diversity and community structure is a perennial goal of ecology. Local community structure can be viewed as the result of numerous local and regional processes; these processes act as filters that reduce the regional species pool down to the observed local community. In...
Background: Both sexes of bat flies in the families Nycteribiidae and Streblidae (Diptera: Hippoboscoidea) reside in the hair or on the wing membranes of bats and feed on blood. Members of the Nycteribiidae transmit bat malaria globally however extant streblids have never been implemented as vectors of bat malaria. The...
Sexual selection can influence the mating system of an organism through multiple mechanisms. These mechanisms result in variation in reproductive success among individuals, and include scramble competition, endurance rivalries, contests, mate choice and cryptic choice, and sperm competition. Understanding the mating system of a species requires the identification of which...
The high productivity of Eastern Boundary Upwelling Ecosystems (EBUE), some of the most productive ecosystems in the globe, is attributed to the nutrient rich waters brought up through upwelling. Climate change scenarios for coastal upwelling systems, predict an intensification of coastal upwelling winds. Associated with intensification in upwelling are biogeochemical...
Circadian clocks generate rhythms in molecular, cellular, physiological, and behavioral processes. Recent studies suggest that disruption of the clock mechanism accelerates organismal senescence and age-related pathologies in mammals. Impaired circadian rhythms are observed in many neurological diseases; however, it is not clear whether loss of rhythms is the cause or...
Predatory lionfishes (Pterois volitans and P. miles) were introduced to Florida waters during the mid to late 1980s, and eventually established self-sustaining breeding populations in the tropical western Atlantic. These invasive species are now widespread along the southeastern seaboard of the United States, across the Caribbean Sea, and in the...
Recruitment of larvae from the plankton is an important determinant of
community structure in marine systems. In populations of many marine species,
recruitment determines the basic demographic parameters of immigration, emigration,
and reproduction. Moreover, the effect of recruitment as an "ecological subsidy" can
determine the strength of interactions among species...
This dissertation investigates the context-dependency of species interactions between seagrass and macroalgae in upwelling-influenced estuaries. In all coastal systems, nutrient loading is multidirectional, resulting from mostly freshwater and marine inputs. The directionality of nutrient inputs may affect the rate of supply of organic matter to the system. In systems where...
Biological invasions provide a unique opportunity to study the mechanisms that regulate community composition and ecosystem function. Invasive species that are also ecosystem engineers can substantially alter physical features in an environment, and this can lead to cascading effects on the biological community. Aquatic-terrestrial interface ecosystems are excellent systems to...
Floods are major disturbance events for riverine ecosystems, directly and indirectly impacting organisms and their habitat. In this study I investigated the role of riverine floods and flow alteration in regulating aquatic macroinvertebrate population and community structure. I examined this problem using a variety of methods: a meta-analytic review of...
Darwin devised the evolutionary theory of sexual selection to account for the manifold extravagances of courtship behaviors and displays. Mating interactions represent a major evolutionary process driving the elaboration, vibrancy, and peculiarity of these courtship traits. For my dissertation research, I strived to elucidate the dynamics that constitute the complex...
Humans are increasing the scale and frequency of many natural disturbances, as well as adding novel disturbances to ecosystems. This thesis uses the arthropod community as a metric to examine the multi-trophic responses to disturbances in California grasslands. Chapter 2 explores how the long-term exclusion of native vertebrate herbivores has...
Biological invasions pose one of the greatest threats to global biodiversity, but many naturalized invaders coexist with the native community. Community ecology theory provides a framework for understanding the mechanisms by which invaders might coexist with native species or exclude them from the community, thus informing management practices to maximize...
Acceptance of marine protected areas (MPAs) as fishery and conservation tools has been hampered by lack of direct evidence that MPAs successfully seed unprotected areas with larvae of targeted species. For the first time, we present direct evidence of large-scale population connectivity within an existing and effective network of MPAs....