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Microbial Abundance and Community Analysis in Devil’s Hole, Harrington Sound, Bermuda

Creator:: Denman, Carmen C.
Abstract:: Microbial activity within elevated CO2 and oxygen depleted environments changes with density driven stratification overturn in the seasonally anoxic region of Devil’s Hole, Bermuda. The temperature gradient developed during the summer months creates a natural laboratory to study bacterial and virus population density and microbial community dynamics in the anoxic...
Resource Type:: Honors College Thesis
Full Text:: ., Kevin L. Vergin, Jang-Cheon Cho, Michael S. Rappe, Craig A. Carlson, and Stephen J. Giovannoni

Disturbances in a marine bacterioplankton system drive community assembly towards niche-based processes

Creator:: Vergin, Kevin L.
Abstract:: Over 100 monthly bacterioplankton DNA samples, from each of the surface and 200 m depths at the Bermuda Atlantic Time-series Study (BATS) site, were analyzed for community assembly processes. Correlation networks, filtered for potential autocorrelation artifacts, were constructed for each depth. Network characteristics for the two depths were remarkably similar...
Resource Type:: Masters Thesis
Full Text:: . ©Copyright by Kevin L.Vergin January 6, 2015 All Rights Reserved Disturbances in a Marine

Conserved properties in the metagenome of a large bacterioplankton population

Creator:: Wilhelm, Larry John
Abstract:: Candidatus Pelagibacter ubique is the first cultured representative of the SAR11 clade, a clade that is found throughout the oceans and accounts for approximately 25% of all bacterial cells [1]. It has a streamlined genome that is the smallest of any known free-living organism. In this study the complete genome...
Resource Type:: Masters Thesis
Full Text:: having a cohort of similar age and humor has been crucial. Kevin Vergin has been an invaluable source

Culturing uncultured environmental microorganisms

Creator:: Connon, Stephanie A.
Abstract:: Research on natural environments, over the last decade, is replete with microbial diversity studies that used culture-independent approaches. The cloning and sequencing of the 16S rRNA genes has been the driving force in the expansion of awareness about the great diversity of previously undiscovered microorganisms. Well-known uncultured groups of microorganisms...
Resource Type:: Dissertation
Full Text:: AN ABSTRACT OF THE DISSERTATION OF Stephanie A. Connon for the

A genomic and proteomic characterization of the first cultured oligotrophic marine Gammaproteobacterium from the SAR92 clade

Creator:: Mellbye, Brett L.
Abstract:: High-throughput culturing (HTC) consisting of extinction culturing in autoclaved seawater has led to the isolation and characterization of many novel strains of oligotrophic marine bacteria. Strain HTCC 2207 was isolated from the Oregon coast by the HTC method. Phylogenetic analysis based on 16S rRNA gene sequence showed that this strain...
Resource Type:: Honors College Thesis
Full Text:: A Genomic and Proteomic Characterization of the

Microbial Abundance and Community Analysis in Devil’s Hole, Harrington Sound, Bermuda

Creator:: Denman, Carmen C.
Abstract:: Microbial activity within elevated CO2 and oxygen depleted environments changes with density driven stratification overturn in the seasonally anoxic region of Devil’s Hole, Bermuda. The temperature gradient developed during the summer months creates a natural laboratory to study bacterial and virus population density and microbial community dynamics in the anoxic...
Resource Type:: Honors College Thesis
Full Text:: ., Kevin L. Vergin, Jang-Cheon Cho, Michael S. Rappe, Craig A. Carlson, and Stephen J. Giovannoni

Bacterioplankton diversity in the lower ocean mixed layer

Creator:: Wright, Terah Diana
Resource Type:: Masters Thesis
Full Text:: oligonucleotide probe hybridizations. In this study, a clone library of bacterial 6S rRNA genes collected from a

Diversity of bacterioplankton and plastid SSU rRNA genes from the eastern and western continental shelves of the United States

Creator:: Rappé, Michael Stephen
Abstract:: The phylogenetic diversity of two continental shelf picoplankton communities was examined by analyzing SSU (16S) ribosomal RNA (rRNA) genes amplified from environmental DNA with bacterial-specific primers and the polymerase chain reaction (PCR). Picoplankton populations collected from the pycnocline (10 m) over the eastern continental shelf of the United States near...
Resource Type:: Dissertation
Full Text:: States 8 km west of Yaquina Head, Oregon, served as sources of bulk nucleic acids used in this study. A

Microbial diversity, metabolic potential, and transcriptional activity along the inner continental shelf of the Northeast Pacific Ocean

Creator:: Bertagnolli, Anthony D.
Abstract:: Continental shelves located along eastern boundary currents occupy relatively small volumes of the world’s oceans, yet are responsible for a large proportion of global primary production. The Oregon coast is among these ecosystems. Recent analyses of dissolved oxygen at shallow depths in the water column has suggested increasing episodes of...
Resource Type:: Dissertation
Full Text:: relatively small volumes of the world’s oceans, yet are responsible for a large proportion of global

Genomic-assisted determination of the natural nutrient requirements of the cosmopolitan marine bacterium 'Candidatus Pelagibacter ubique'

Creator:: Tripp, H. James
Abstract:: To identify factors limiting 'Candidatus Pelagibacter ubique' maximum cell density and growth rate in pure culture on seawater, the genome sequence of 'Cand. P. ubique' was analyzed, culturing experiments with organic and inorganic nutrient additions were made, and radiotracer uptake experiments were performed. The genome was sequenced, custom data mining...
Resource Type:: Dissertation
Full Text:: mining tools were developed, and all major biosynthetic and energy pathways were reconstructed from a

ScholarsArchive@OSU

Microbial Abundance and Community Analysis in Devil’s Hole, Harrington Sound, Bermuda

Disturbances in a marine bacterioplankton system drive community assembly towards niche-based processes

Conserved properties in the metagenome of a large bacterioplankton population

Culturing uncultured environmental microorganisms

A genomic and proteomic characterization of the first cultured oligotrophic marine Gammaproteobacterium from the SAR92 clade

Microbial Abundance and Community Analysis in Devil’s Hole, Harrington Sound, Bermuda

Bacterioplankton diversity in the lower ocean mixed layer

Diversity of bacterioplankton and plastid SSU rRNA genes from the eastern and western continental shelves of the United States

Microbial diversity, metabolic potential, and transcriptional activity along the inner continental shelf of the Northeast Pacific Ocean

Genomic-assisted determination of the natural nutrient requirements of the cosmopolitan marine bacterium 'Candidatus Pelagibacter ubique'

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