Index Catalog // ScholarsArchive@OSU

Conserved properties in the metagenome of a large bacterioplankton population

Creator:: Wilhelm, Larry John
Abstract:: Candidatus Pelagibacter ubique is the first cultured representative of the SAR11 clade, a clade that is found throughout the oceans and accounts for approximately 25% of all bacterial cells [1]. It has a streamlined genome that is the smallest of any known free-living organism. In this study the complete genome...
Resource Type:: Masters Thesis
Full Text:: HTCC1062. A large proportion of these (71,696) are syntigs, passing the best-hit test (Fig. 2C). The

Culturing uncultured environmental microorganisms

Creator:: Connon, Stephanie A.
Abstract:: Research on natural environments, over the last decade, is replete with microbial diversity studies that used culture-independent approaches. The cloning and sequencing of the 16S rRNA genes has been the driving force in the expansion of awareness about the great diversity of previously undiscovered microorganisms. Well-known uncultured groups of microorganisms...
Resource Type:: Dissertation
Full Text:: AN ABSTRACT OF THE DISSERTATION OF Stephanie A. Connon for the

The isolation of Lactococcus lactis subsp. cremoris from nature with probes for 16S ribosomal RNAs

Creator:: Salama, Maysoon
Resource Type:: Dissertation
Full Text:: plant sources confirmed that plants are a natural source of this bacterium. The fact that a few

A genomic and proteomic characterization of the first cultured oligotrophic marine Gammaproteobacterium from the SAR92 clade

Creator:: Mellbye, Brett L.
Abstract:: High-throughput culturing (HTC) consisting of extinction culturing in autoclaved seawater has led to the isolation and characterization of many novel strains of oligotrophic marine bacteria. Strain HTCC 2207 was isolated from the Oregon coast by the HTC method. Phylogenetic analysis based on 16S rRNA gene sequence showed that this strain...
Resource Type:: Honors College Thesis
Full Text:: . Keller. 2002. Cultivating the uncultured. Proc Natl Acad Sci USA 99: 15681-15686. APPENDIX A The

Characterization of novel marine oligotrophic bacteria isolated from the Pacific Ocean : description of Marinivirgula fluito gen. nov., sp. nov., Marinivirgula obesa gen. nov., sp. nov. and Litincola parvulus gen. nov., sp. nov.

Creator:: Shin, Eun Jung
Abstract:: A new high-throughput culturing (HTC) method using a low nutrient heterotrophic medium (LNHM) has led to the isolation of many novel strains of oligotrophic bacteria from marine ecosystems. Four strains belonging to a single dade, HTCC2151, HTCC218OT, HTCC2178T and HTCC2188T, were isolated from the coast of Oregon by the HTC...
Resource Type:: Masters Thesis
Full Text:: : Giovannoni A new high-throughput culturing (HTC) method using a low nutrient heterotrophic medium (LNHM

Diversity of bacterioplankton and plastid SSU rRNA genes from the eastern and western continental shelves of the United States

Creator:: Rappé, Michael Stephen
Abstract:: The phylogenetic diversity of two continental shelf picoplankton communities was examined by analyzing SSU (16S) ribosomal RNA (rRNA) genes amplified from environmental DNA with bacterial-specific primers and the polymerase chain reaction (PCR). Picoplankton populations collected from the pycnocline (10 m) over the eastern continental shelf of the United States near...
Resource Type:: Dissertation
Full Text:: States 8 km west of Yaquina Head, Oregon, served as sources of bulk nucleic acids used in this study. A

Outliers: The Unusual Characteristics of Marine Carbon-Oxidizing Bacterial Cells Adapted to Oligotrophic Conditions

Creator:: Noell, Stephen E.
Abstract:: Oligotrophic bacteria are adapted to low nutrient concentrations. As most of the ocean is oligotrophic (low in nutrients), oligotrophic bacteria thrive in the ocean and make up the majority of planktonic cells. Because of this, oligotrophs are crucial to oceanic nutrient cycles. However, marine oligotrophic bacteria are dwarfed by their...
Resource Type:: Dissertation
Full Text:: multiple hypotheses: competition for nutrients is one of the key factors in the success of SAR11 cells; a

Metabolism of one carbon (C1) and methylated compounds in SAR11 bacteria

Creator:: Sun, Jing
Abstract:: SAR11 Alphaproteobacteria are the most abundant aerobic chemoheterotrophs in ocean surface waters. Previous studies have indicated SAR11 cells play an important role in marine carbon cycling and consume up to half of some common dissolved organic compounds, such as amino acids. During sequencing of the first SAR11 genome, genes for...
Resource Type:: Dissertation
Full Text:: genome sequences and physiological experiments showed that SAR11 can utilize a variety of C1 and

An analysis of Sargasso Sea bacterioplankton diversity using 16S ribosomal RNA

Creator:: Britschgi, Theresa Baden
Abstract:: The objective of this project was to use ribosomal RNA genes, cloned from natural populations of Sargasso Sea bacterioplankton, as markers for picoplankton diversity. It is widely recognised that a majority of microorganisms have yet to be cultivated, and therefore much of extant microbial diversity remains unknown (50). The method...
Resource Type:: Masters Thesis
Full Text:: U-AG-C A aU TA, G A c8 Gzg AAcc.... u....uAGAAGUGUCGOAy G-C A Uu US 7, 2C Ho ii i I 111 1.11 1 1

Proteomic analyses of marine bacteria

Creator:: Sowell, Sarah M.
Abstract:: Proteins are the metabolic machines of the cell and as such, the study of proteins could illuminate the dominant biological activities that are occurring within cells and reveal how an organism interacts with its environment. Here, we used proteomic techniques to study the abundant marine bacterium SAR11 both as an...
Resource Type:: Dissertation
Full Text:: -regulated in stationary phase. The up-regulation of this suite of proteins suggests a system by which

ScholarsArchive@OSU

Conserved properties in the metagenome of a large bacterioplankton population

Culturing uncultured environmental microorganisms

The isolation of Lactococcus lactis subsp. cremoris from nature with probes for 16S ribosomal RNAs

A genomic and proteomic characterization of the first cultured oligotrophic marine Gammaproteobacterium from the SAR92 clade

Characterization of novel marine oligotrophic bacteria isolated from the Pacific Ocean : description of Marinivirgula fluito gen. nov., sp. nov., Marinivirgula obesa gen. nov., sp. nov. and Litincola parvulus gen. nov., sp. nov.

Diversity of bacterioplankton and plastid SSU rRNA genes from the eastern and western continental shelves of the United States

Outliers: The Unusual Characteristics of Marine Carbon-Oxidizing Bacterial Cells Adapted to Oligotrophic Conditions

Metabolism of one carbon (C1) and methylated compounds in SAR11 bacteria

An analysis of Sargasso Sea bacterioplankton diversity using 16S ribosomal RNA

Proteomic analyses of marine bacteria

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