Index Catalog // ScholarsArchive@OSU

A genomic and proteomic characterization of the first cultured oligotrophic marine Gammaproteobacterium from the SAR92 clade

Creator:: Mellbye, Brett L.
Abstract:: High-throughput culturing (HTC) consisting of extinction culturing in autoclaved seawater has led to the isolation and characterization of many novel strains of oligotrophic marine bacteria. Strain HTCC 2207 was isolated from the Oregon coast by the HTC method. Phylogenetic analysis based on 16S rRNA gene sequence showed that this strain...
Resource Type:: Honors College Thesis
Full Text:: strains of oligotrophic marine bacteria. Strain HTCC 2207 was isolated from the Oregon coast by the HTC

Conserved properties in the metagenome of a large bacterioplankton population

Creator:: Wilhelm, Larry John
Abstract:: Candidatus Pelagibacter ubique is the first cultured representative of the SAR11 clade, a clade that is found throughout the oceans and accounts for approximately 25% of all bacterial cells [1]. It has a streamlined genome that is the smallest of any known free-living organism. In this study the complete genome...
Resource Type:: Masters Thesis
Full Text:: 2 Summary of syntig analysis of 7 marine microbial species and E. coli………………………………………………………… 24

Genomic-assisted determination of the natural nutrient requirements of the cosmopolitan marine bacterium 'Candidatus Pelagibacter ubique'

Creator:: Tripp, H. James
Abstract:: To identify factors limiting 'Candidatus Pelagibacter ubique' maximum cell density and growth rate in pure culture on seawater, the genome sequence of 'Cand. P. ubique' was analyzed, culturing experiments with organic and inorganic nutrient additions were made, and radiotracer uptake experiments were performed. The genome was sequenced, custom data mining...
Resource Type:: Dissertation
Full Text:: .............................................................................................................88 4. SAR11 MARINE BACTERIA REQUIRE EXOGENOUS REDUCED SULPHUR FOR GROWTH

Prokaryotes associated with marine crust

Creator:: Mason, Olivia Underwood
Abstract:: Oceanic crust covers nearly 70% of the Earth's surface, of which, the upper, sediment layer is estimated to harbor substantial microbial biomass. Marine crust; however, extends several kilometers beyond this surficial layer, and includes the basalt and gabbro layers. In particular, the basalt layer has high permeabilities which allows for...
Resource Type:: Dissertation
Full Text:: . .......................................................................................................... 3 Figure 2.1. Overview of the Bacteria and Archaea associated with marine basalts

Proteomic analyses of marine bacteria

Creator:: Sowell, Sarah M.
Abstract:: Proteins are the metabolic machines of the cell and as such, the study of proteins could illuminate the dominant biological activities that are occurring within cells and reveal how an organism interacts with its environment. Here, we used proteomic techniques to study the abundant marine bacterium SAR11 both as an...
Resource Type:: Dissertation
Full Text:: Cellular Biology presented on August 28, 2008. Title: Proteomic Analyses of Marine Bacteria

Development and application of genomic DNA based methods for the identification and characterization of marine bacterioplankton

Creator:: Lanoil, Brian D.
Abstract:: A series of experiments was performed to determine the feasibility of genomic DNA-based methods for ecological and physiological studies of dominant bacteria from complex natural systems. Two approaches, bacterial chromosomal painting (BCP) and environmental genomics (EG), were evaluated for the potential to identify and enumerate specific bacterial groups in situ...
Resource Type:: Dissertation

Bacterioplankton diversity in the lower ocean mixed layer

Creator:: Wright, Terah Diana
Resource Type:: Masters Thesis
Full Text:: of bacteria with a wide variety of metabolic capabilities are known to live in marine habitats

The proteomic and transcriptomic responses to iron, sulfur, and nitrogen limitation in the abundant marine bacterium Candidatus Pelagibacter ubique

Creator:: Smith, Daniel P.
Abstract:: Batch cultures of Candidatus Pelagibacter ubique were grown under iron-, organosulfur-, and nitrogen-limiting conditions to understand how this ubiquitous marine bacterium responds to and interacts with environments where growth is limited by the availability of these nutrients. Global gene expression was monitored using microarrays and quantitative mass spectrometry to observe...
Resource Type:: Dissertation
Full Text:: environmental conditions, marine bacteria may bloom into toxic red tides, produce anoxic conditions lethal to

Marine bacterioplankton abundances and distributions

Creator:: Morris, Robert M.
Abstract:: Microorganisms play key roles in ocean biogeochemistry. However, several predominant groups of uncultured bacterioplankton thought to contribute to important biogeochemical processes in the oceans are known primarily from gene cloning studies. Although these studies have greatly expanded our view of microbial diversity in the oceans, they are not quantitative and...
Resource Type:: Dissertation
Full Text:: , which have identified several groups of marine bacteria that are thought to be abundant in seawater1

Characterization of novel marine oligotrophic bacteria isolated from the Pacific Ocean : description of Marinivirgula fluito gen. nov., sp. nov., Marinivirgula obesa gen. nov., sp. nov. and Litincola parvulus gen. nov., sp. nov.

Creator:: Shin, Eun Jung
Abstract:: A new high-throughput culturing (HTC) method using a low nutrient heterotrophic medium (LNHM) has led to the isolation of many novel strains of oligotrophic bacteria from marine ecosystems. Four strains belonging to a single dade, HTCC2151, HTCC218OT, HTCC2178T and HTCC2188T, were isolated from the coast of Oregon by the HTC...
Resource Type:: Masters Thesis
Full Text:: ) has led to the isolation of many novel strains of oligotrophic bacteria from marine ecosystems. Four

ScholarsArchive@OSU

A genomic and proteomic characterization of the first cultured oligotrophic marine Gammaproteobacterium from the SAR92 clade

Conserved properties in the metagenome of a large bacterioplankton population

Genomic-assisted determination of the natural nutrient requirements of the cosmopolitan marine bacterium 'Candidatus Pelagibacter ubique'

Prokaryotes associated with marine crust

Proteomic analyses of marine bacteria

Development and application of genomic DNA based methods for the identification and characterization of marine bacterioplankton

Bacterioplankton diversity in the lower ocean mixed layer

The proteomic and transcriptomic responses to iron, sulfur, and nitrogen limitation in the abundant marine bacterium Candidatus Pelagibacter ubique

Marine bacterioplankton abundances and distributions

Characterization of novel marine oligotrophic bacteria isolated from the Pacific Ocean : description of Marinivirgula fluito gen. nov., sp. nov., Marinivirgula obesa gen. nov., sp. nov. and Litincola parvulus gen. nov., sp. nov.

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