Amendments and fertilizers applied to optimize crop production and improve soil health also supply inputs of soil organic matter (SOM) and nutrients that affect soil microorganisms. In the dairy-intensive Pacific Northwest, dairy manure is stored as slurry mixtures until conditions are appropriate for soil application. During storage, the manure begins...
Temperate coniferous forests, such as those that cover vast areas of the western US and Canada, have evolved to depend on cycles of disturbance for succession of species and overall ecosystem maintenance. Many of these forest systems are managed, often for timber production, where disturbances are of anthropogenic origin and...
Algae can be used in a variety of wastewater systems to capture nutrients while fixing carbon dioxide from the atmosphere. I conducted field trials at three locations in Oregon with both corn and potato crops to assess the agronomic value and environmental impact of using the resulting algal biomass as...
Nitrification is a critical step in the global nitrogen cycle involving the biological oxidation of ammonia (NH₃) to nitrite (NO₂⁻ ) and then to nitrate (NO₃⁻). The first step in nitrification is carried out by NH₃-oxidizing bacteria (AOB) and archaea (AOA), and the second by NO₂⁻-oxidizing bacteria (NOB). In addition...
Ectomycorrhizal fungi (EmF) form symbioses with trees. These symbioses profoundly influence forest ecology. Certain EmF form specialized profusions of hyphae, known as ectomycorrhizal fungal mats (mats) which are visible to the naked eye, alter forest soil biogeochemistry, substantially contribute to soil microbial biomass/respiration and support unique microbial communities. Piloderma and...
Forests are one of the largest repositories of terrestrial C. Understanding factors that drive organic matter transformations and nutrient efflux from these systems is therefore highly important. Temperate forests are of particular significance due to the large fraction of C that is stored below ground in the soil. Characterizing nutrient...
Nitrification and denitrification are major biological processes transforming nitrogen (N) in soils to plant available N, highly leachable nitrate (NO₃⁻) and gaseous N oxides. Although many studies in the past have studied N cycling communities, the effect of increased N inputs on ammonia-oxidizer and denitrifier population dynamics is still under...
Changes in the type and amount of plant inputs can occur gradually, as with succession, or rapidly, as with harvesting or wildfire. With global change it is anticipated that both gradual and immediate scenarios will occur at increasing frequency. Changes in vegetation inputs alter the quality and quantity of soil...
Sagebrush steppe ecosystems in the Great Basin have become increasingly threatened by the proliferation of cheatgrass (Bromus tectorum L.), an invasive annual grass. Diverse sagebrush and perennial bunchgrass landscapes can be converted to homogenous cheatgrass grasslands mainly through the effects of fire. Although the consequences of this conversion are well...
The use of high throughput molecular methods that allow for the study of bacterial communities in environmental samples is commonplace in microbial ecology. Until recently, fungal community ecology has
focused on isolation, collection of sporocarps, or collection of ectomycorrhizal roots. The techniques used to extract and amplify DNA from environmental...