The understanding of Discipline-Specific Language is an important competency for students of any field to begin mastering early in their studies, since it serves as a prerequisite for both the analysis of expert text and precise communication. Therefore, an introductory curriculum should pay careful attention to how it incorporates, defines,...
Hydraulic conductivity of hemp stems under water-stress conditions was investigated. When plants face with water-stress conditions, embolies (cavitation) are triggered in xylem channels and water transport from the root to the leaves is affected. The relation between percentage loss of water transfer ability within the xylem channels can be described...
Agrivoltaics, which integrates photovoltaic power production with agriculture in the same plot of land, has the potential to reduce land competition and crop irrigation. To optimize agrivoltaic systems for crop growth, energy pathways must be characterized. While solar panels shade the crops, they also emit longwave radiation. At the end...
In weak supervision learning, label information can be provided at different levels of granularity. For example, in multi-instance multi-label learning, samples are organized into bags and labels for each class are provided at the bag level. For small datasets, this approach offers means of reducing the labeling efforts. However, in...
Question Answering in natural language processing has achieved significant progress in recent years. Yet, training and testing set methodology to evaluate the language models has proved inadequate. Adversarial examples aid us in finding loopholes inside these models and provide insights into their inner workings. In this work, an evaluation based...
This thesis presents two conceptually linked papers outlining methodologies to improve community resilience. Both papers employ Seaside, Oregon as a testbed community and consider the seismic-tsunami hazard posed by the Cascadia Subduction Zone. The first paper presents a framework to deaggregate the results of a multi-hazard, multi-infrastructure, damage analysis by...
Managing wildlands to protect species and ecosystem services in response to climate change is challenging. To develop effective long-term strategies, natural resource managers need to account for the projected effects of climate change as well as the uncertainty inherent in those projections. Vegetation models are one important source of projected...
The use of Landsat data has historically been constrained to spectral and spatial information derived from a carefully selected image or set of images. However, free and open access to Landsat imagery combined with advances in data storage and computing are revolutionizing how the Landsat temporal domain is used to...
Coastal communities throughout the US West Coast and elsewhere are facing the daunting task of preparing for climate change impacts, particularly the hazards from increased flooding and erosion. With sea-level rise, changing storminess patterns, and possible changes to the frequency and severity of major El Niño events, communities are already...
This dissertation addresses object recognition in challenging settings, where distinct object classes are visually very similar (e.g., species of birds and insects) and/or access to training examples of object classes is limited (e.g., due to the associated high costs of data annotation). In this dissertation, we present a variety of...
Fossil fuels have been the main source of energy for a long period but due to growing concerns over climate change, oil depletion and energy security, the development of renewable sources of energy such as biofuels have been flourishing over the past few decades. Despite the fact that biofuels are...
There is growing commercial interest in the use of unmanned aerial vehicles (UAVs) in urban environments, specifically for package delivery applications. However, the size, complexity and sheer numbers of expected UAVs makes conventional air traffic management that relies on human air traffic controllers infeasible. To enable UAVs to safely and...
Society faces many complex management problems, particularly in the area of shared public resources such as ecosystems. Existing decision making processes are often guided by personal experience and political ideology rather than state-of-the-art scientific understanding. This dissertation envisions a future in which multiple stakeholders are provided with computational tools for...
Social media sources such as Twitter represent a massively distributed social sensor over diverse topics ranging from social and political events to entertainment and sports news. However, due to the overwhelming volume of content, it can be difficult to identify novel and significant content within a broad topic in a...
Apart from the traditional role of preventing progression from HIV to AIDS, antiretroviral drug therapy (ART) has an additional benefit of substantially reducing infectiousness, making them potentially an important strategy in the fight against HIV. Recent advances in drug therapy have also seen the use of antiretroviral drugs as a...
This research explores several novel approaches to improve visualization and segmentation
of point clouds acquired with 3D laser scanning. 3D laser scanning is used
in a wide variety of applications including surveying and mapping, transportation asset
management, facilities management, building information modeling, crime scene investigations,
cultural heritage and geologic instigations....
Multipurpose management of hydrosystems face a number of uncertainties related to hydrologic variability and nonstationarity. Anticipated air temperature increases in the Pacific Northwest region are projected to alter the timing and quantity of streamflow associated with precipitation shifting from snow to rain, including shorter winter runoff periods, earlier spring runoff,...
Ethanol production from lignocellulosic feedstock has been under intense scrutiny as a transportation fuel due to its potential to address concerns of increasing energy consumption, limited fossil energy resources, climate changes due to greenhouse gas emissions from fossil fuels, and especially use of non-food biomaterials, which address the biggest limitation...
Over the past several decades, quality climate information has become extremely valuable to environmental decision makers, yet little is known about how this information is distributed within a social network of professionals. This study focuses on a climate knowledge network associated with a NOAA Climate Impacts Research Consortium (CIRC) study...
While water scarcity and energy demand are continuously increasing in the world, alternative sources are needed to meet the requirement of a growing population. Microbial Fuel Cell (MFC) is a sustainable technology that converts organic matter in wastewater into electricity, thus it can be a potential alternative source for water...
Throughout many of the world’s mountain ranges snowpack accumulates during the winter and into the spring, providing a natural reservoir for water. As this reservoir melts, it fills streams and recharges groundwater for over 1 billion people globally. Despite its importance to water resources, our understanding of the storage capacity...
Improved monitoring of forest biomass is needed to quantify natural and anthropogenic effects on the terrestrial carbon cycle. Landsat's temporal and spatial coverage, fine spatial grain, and long history of earth observations provide a unique opportunity for measuring biophysical properties of vegetation across large areas and long time scales. However,...
The Clean Water Act imposes Total Maximum Daily Load (TMDL) limits on pollutant concentrations within wastewater effluent; in Oregon, thermal discharge is one of the pollutants subject to regulation. The City of Woodburn, Oregon, funded a series of pilot scale studies to investigate the utility of natural systems to reduce...
The U.S Pacific Northwest contains a wide variety of ecosystems, all subject to relatively dry summers and wet winters. As has been shown with paleoclimatic and paleoecological data, the region is vulnerable to changes in climate. We assessed the sensitivities of vegetation distributions, carbon stocks, and fire regimes to 21st...
MIKE SHE is a fully distributed, physically-based hydrologic model that can simulate water movement over and under the Earth's surface. Evapotranspiration (ET) is one of the components of this model. MIKE SHE uses a modification of the Kristensen -Jensen (1975) method to calculate actual ET. This method is based on...
Salmonid run sizes are strongly affected by their early marine stage. Fully understanding the life history of salmonids means understanding how they interact with their marine environment and with other fishes. Changes in the biological and physical environment off the Columbia River region affects the distribution and abundance of predatory...
Protein secondary structure prediction plays a pivotal role in predicting protein folding in three-dimensions. Its task is to assign each residue one of the three secondary structure classes helix, strand, or random coil. This is an instance of the problem of sequential supervised learning in machine learning. This thesis describes...
Functional programming is concerned with referential transparency, that is, given a certain function and its parameter, that the result will always be the same. However, it seems that this is violated in applications involving uncertainty, such as rolling a dice. This thesis defines the background of probabilistic programming and domain-specific...
A relatively stable, persistent and historical problem with elevated NO₃⁻ concentrations in rural drinking wells in the southern Willamette Valley, Oregon is evident. What is the origin of NO₃⁻ in rural drinking water wells in this area? The answer to the question is not simple. Many non-point sources contribute to...
Reinforcement learning (RL) is the study of systems that learn from interaction with their environment. The current framework of Reinforcement Learning is based on receiving scalar rewards, which the agent aims to maximize. But in many real world situations, tradeoffs must be made among multiple objectives. This necessitates the use...
Environmental and regulatory concerns are causing confined animal feeding operations (CAFO's) to account for phosphorous content when applying wastewater to agricultural fields for disposal. In most cases this requires more land to spread the waste onto so that the phosphorous needs of the crop are not exceeded. A mobile process...
Salmonid populations in the Pacific Northwest are at historic lows and many
populations continue to decline. Previous studies have linked salmonid declines to land
use through degradation of in-stream physical habitat, but few of these studies have taken
geology into consideration. This study relates habitat parameters known to be important...
Co-management is considered an alternative approach to fisheries management,
however, not all co-managed fisheries have been successful. Most studies discussing the
success and failure of co-management have emphasized economic and social attributes of
success and failure, such as fishery rights and institutional arrangements. The effect on
co-management of biological characteristics,...
Aggregation and species association of 9 species of phytophagous and
predaceous mites were studied for 6 yr in an orchard with 100, 2 m tall 'Red
Delicious' apple trees. To quantify aggregation, a method was developed that is
powerful, and easily interpreted. It relates the proportion of habitat occupied to...
Lignocellulosic biomass represents a vast supply of fermentable carbohydrates and functional aromatic compounds. Conversion of lignocellulosics to ethanol and other useful products would be of widespread economical and environmental benefit. Better understanding of the behavior of different lignicellulosic feedstocks in fermentation protocols as well as catalytic activities involved in lignocellulosic...
The Oregon Department of Fish and Wildlife's (ODFW) Ecological Analysis
Center (EAC) is in the process of creating, from Landsat Thematic Mapper (TM)
imagery, a vegetation map of Oregon that will meet the latest standards set by the
National Gap Analysis Program. Since field verification is often expensive and by...
The practice of literate programming is not widespread because existing literate programming systems have some undesirable characteristics such as programming language and text processor dependence and lack of flexible tools for viewing and manipulation of the source file. This dissertation describes the literate programming system AOPS (Abstraction Oriented Programming System)...