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Filtering by: Alternative title ssim EC 763 Remove constraint Alternative title ssim: EC 763 Committee Member Chang, Jeff Remove constraint Committee Member: Chang, Jeff

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Genome-enabled investigation of the minimal growth requirements andphosphate metabolism for Pelagibacter marine bacteria

Creator:

Carini, Paul J.

Abstract:

Members of the SAR11 clade of heterotrophic α-proteobacteria are ubiquitous and abundant in the world's oceans where they are thought to play a pivotal role in the global carbon cycle. The first SAR11 bacterium cultivated in vitro, 'Candidatus Pelagibacter ubique' HTCC1062 (Ca. P. ubique), was isolated by dilution into sterile...

Resource Type:

Dissertation
Advances in Freshwater Cyanobacterial Genomics

Creator:

Brown, Nathaniel M.

Abstract:

Limnology is undergoing a transition to high-throughput -omic analysis of freshwater bacterial communities. An important first step in making the transition is to characterize several genomes that can be used as references to guide metagenome assembly and analysis. Here I characterize four new freshwater cyanobacterial genomes, a pair of lake...

Resource Type:

Dissertation
Cooperation and conflict in Pseudomonas aeruginosa quorum sensing

Creator:

Wilder, Cara N.

Abstract:

Pseudomonas aeruginosa is an environmental bacterium as well as an opportunistic pathogen that primarily infects immunocompromised individuals, including those suffering from cystic fibrosis. The density-dependent regulation of gene expression via cell-to-cell communication, also termed quorum sensing (QS), is an important virulence determinant in this organism. Generally, P. aeruginosa uses three...

Resource Type:

Dissertation
Transcriptomic analysis using high-throughput sequencing and DNA microarrays

Creator:

Fox, Samuel E.

Abstract:

Transcriptomics and gene expression profiling enables the elucidation of the genetic response of an organism to various environmental cues. Transcriptomics enables the deciphering of differences between two closely related organisms to the same environment and in contrast, enables the elucidation of genetic responses of the same organism to different environmental...

Resource Type:

Dissertation

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Academic Affiliation

Microbiology3

Advisor

Dreher, Theo W.1
Giovannoni, Stephen J.1
Mockler, Todd1
Schuster, Martin1

Commencement Year

Commencement Year range begin – Commencement Year range end

Current results range from 2011 to 2016

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Committee Member

Chang, Jeff[remove]4
Denver, Dee1
Freitag, Michael1
Gitali, Indru1
Halsey, Kim1
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Creator

Brown, Nathaniel M.1
Carini, Paul J.1
Fox, Samuel E.1
Wilder, Cara N.1

Date

Date range begin – Date range end

Current results range from 2011 to 2016

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Decade

2010-20194

Degree Field

Microbiology3
Molecular and Cellular Biology1

Degree Level

Doctoral4

Degree Name

Doctor of Philosophy (Ph.D.)4

Language

English [eng]4

License

All rights reserved4

Non-Academic Affiliation

Oregon State University. Graduate School4

Peer Reviewed

No4

Resource Type

Dissertation4

Rights Statement

In Copyright4

Subject

Microbial genomics2
Algal blooms -- Washington (State) -- Anderson Lake1
Anabaena -- Genome mapping1
Aphanizomenon -- Genetics1
Artificial seawater1
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