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Filtering by: Creator Madden, Christopher Remove constraint Creator: Madden, Christopher Committee Member Fern, Alan Remove constraint Committee Member: Fern, Alan Non-Academic Affiliation Oregon State University. Graduate School Remove constraint Non-Academic Affiliation: Oregon State University. Graduate School

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  • Protein secondary structure prediction using conditional random fields and profiles

    Creator:
    Shen, Rongkun
    Abstract:
    Protein secondary structure prediction plays a pivotal role in predicting protein folding in three-dimensions. Its task is to assign each residue one of the three secondary structure classes helix, strand, or random coil. This is an instance of the problem of sequential supervised learning in machine learning. This thesis describes...
    Resource Type:
    Masters Thesis
    Full Text:
    Christopher K. Mathews for his continuous support and considerateness. I thank my wife Li Li, my lovely

  • Bayesian optimization with empirical constraints

    Creator:
    Azimi, Javad
    Abstract:
    Bayesian Optimization (BO) methods are often used to optimize an unknown function f(•) that is costly to evaluate. They typically work in an iterative manner. In each iteration, given a set of observation points, BO algorithms select k ≥ 1 points to be evaluated. The results of those points are...
    Resource Type:
    Dissertation