Alignment of genomic sequences from different species is becoming an increasingly powerful method in biology, and is being used for many purposes. The result of sequence alignments is a list of pairs of matched locations between the pattern string and the text string. However, without any proper visualization tools to...
A large number of sequential decision-making problems in uncertain environments
can be modeled as Markov Decision Processes (MDPs). In such settings, an agent
can observe at each time step the state of the environment and then executes an
action, causing a stochastic transition to a new state of the environment...
Partial programming is a field of study where users specify an outline or skeleton of a program, but leave various parts undefined. The undefined parts are then completed by an external mechanism to form a complete program. Adaptation-Based Programming (ABP) is a method of partial programming that utilizes techniques from...
We present a method for decentralized, multi-robot exploration in adverse environments where communication is minimal. A key conceptual feature of our method is enabling implicit coordination between robots by training a Convolutional Neural Network (CNN) as a heuristic for planning using Monte Carlo Tree Search (MCTS). Our method consists of...
Anomaly detection aims at detecting the points that appear different than the majority of the data, such that they are suspected to be generated from a different distribution. Anomaly detectors have been applied in many different fields, such as detecting fraudulent behaviors in bank transaction, finding broken sensors in a...
Bayesian Optimization (BO) methods are often used to optimize an unknown function f(•) that is costly to evaluate. They typically work in an iterative manner. In each iteration, given a set of observation points, BO algorithms select k ≥ 1 points to be evaluated. The results of those points are...
We explore the application of deep learning to the disparate fields of natural language processing and computational biology. Both the sentences uttered by humans as well as the RNA and protein sequences found within the cells of their bodies can be considered formal languages in computer science, as sets of...
For a certain class of Z²-actions, we provide a proof of a conjecture that the ratio of the Perron eigenvalues of the transfer matrices of the free boundary restrictions converge to the entropy of that action. Also, a novel method for computing the entropy of Z²-actions is conjectured.
The thesis focuses on activity recognition from sensor data, which has spurred a great deal of interest due to its impact on health care and security. Previous work on activity recognition from multivariate time series data has mainly applied supervised learning techniques which require a high degree of annotation effort...
In real networks, identifying dense regions is of great importance. For example, in a network that represents academic collaboration, authors within the densest component of the graph tend to be the most prolific. Dense subgraphs often identify communities in social networks. And dense subgraphs can be used to discover regulatory...