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Filtering by: Creator Attardo, Geoffrey M. Remove constraint Creator: Attardo, Geoffrey M. Committee Member Fern, Xiaoli Remove constraint Committee Member: Fern, Xiaoli License All rights reserved Remove constraint License: All rights reserved

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  • Computational Elucidation of the Regulatory SNPs in the Non-Coding Regions of the Human Genome

    Creator:
    Yao, Yao
    Abstract:
    We describe a series of novel computational models, CERENKOV (Computational Elucidation of the REgulatory NonKOding Variome) and its successors CERENKOV2, CERENKOV3, and Convolutional CERENKOV3, for discriminating regulatory single nucleotide polymorphisms (rSNPs) from non-regulatory SNPs within non-coding genetic loci. The CERENKOV models are designed for recognizing rSNPs in the context of...
    Resource Type:
    Dissertation

  • Towards Narrative Understanding with Deep Neural Networks and Hidden Markov Models

    Creator:
    Orr, J. Walker
    Abstract:
    Narratives are central to communication and the human experience. For a computer system to understand a narrative, it must be able to identify the key facts or plot elements that describe what happened or how the world has changed. These element are called events;establishing a document’s events and the relationships...
    Resource Type:
    Dissertation

  • Parsing with Recurrent Neural Networks

    Creator:
    Cross, James Henry, III
    Abstract:
    Machine learning models for natural language processing have traditionally relied on large numbers of discrete features, built up from atomic categories such as word forms and part-of-speech labels, which are considered completely distinct from each other. Recently however, the advent of dense feature representations coupled with deep learning techniques has...
    Resource Type:
    Dissertation

  • On error bounds for linear feature extraction

    Creator:
    Thangavelu, Madan Kumar
    Abstract:
    Linear transformation for dimension reduction is a well established problem in the field of machine learning. Due to the numerous observability of parameters and data, processing of the data in its raw form is computationally complex and difficult to visualize. Dimension reduction by means of feature extraction offers a strong...
    Resource Type:
    Masters Thesis
    Full Text:
    where, k ≪ m. It is important to note that the performance of the dimension reduction step is task

  • Exploration of regression models for cancer noncoding mutation recurrence

    Creator:
    Xu, Tanjin
    Abstract:
    An important impact of the genome technology revolution will be the elucidation of mechanisms of cancer pathogenesis, leading to improvements in the diagnosis of cancer and the selection of cancer treatment. Integrated with current well-studied massive knowledge and findings about the role of protein-coding mutations in cancer, demystifying the functional...
    Resource Type:
    Masters Thesis
    Full Text:
    nmin is reached. 1. Select m variables at random from the p variables. 2. Pick the best variable

  • Information-theoretic Approach to Design and Evaluate Privacy-preserving and Fair Frameworks for Continuous High-dimensional Data

    Creator:
    Alsulaimawi, Zahir Ahmed Hussein
    Abstract:
    Deep learning is becoming the latest trend in sensitive applications, such as healthcare, criminal justice, and finance. As these new applications emerge, adversaries are circumventing them. Further, there have been concerns about the possibility of bias and discrimination in predictive applications. In order to address these issues, we propose an...
    Resource Type:
    Dissertation
    Full Text:
    of training iterations do 2: for k steps do • Sample minibatch of m noise samples { z(1), . . . ,z

  • Domain-Independent Planning for Markov Decision Processes with Factored State and Action Spaces

    Creator:
    Raghavan, Aswin
    Abstract:
    Markov Decision Processes (MDPs) are the de-facto formalism for studying sequential decision making problems with uncertainty, ranging from classical problems such as inventory control and path planning, to more complex problems such as reservoir control under rainfall uncertainty and emergency response optimization for fire and medical emergencies. Most prior research...
    Resource Type:
    Dissertation
    Full Text:
    Factored Action Regression (MBFAR) is initialized with Z = ∅. The maximum size M is compared to the number

  • New Directions in Search-based Structured Prediction: Multi-Task Learning and Integration of Deep Models

    Creator:
    Ma, Chao
    Abstract:
    This thesis studies the problem of structured prediction (SP), where the agent needs to predict a structured output for a given structured input (e.g., Part-of-Speech tagging sequence for an input sentence). Many important applications including machine translation in natural language processing (NLP) and image interpretation in computer vision can be...
    Resource Type:
    Dissertation
    Full Text:
    assume the availability of a joint feature function Φ : X × Y → Rm that computes an m dimensional feature