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Filtering by: Creator Krankina, Olga N. Remove constraint Creator: Krankina, Olga N. Committee Member Fern, Xiaoli Remove constraint Committee Member: Fern, Xiaoli

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  • Exploration of regression models for cancer noncoding mutation recurrence

    Creator:
    Xu, Tanjin
    Abstract:
    An important impact of the genome technology revolution will be the elucidation of mechanisms of cancer pathogenesis, leading to improvements in the diagnosis of cancer and the selection of cancer treatment. Integrated with current well-studied massive knowledge and findings about the role of protein-coding mutations in cancer, demystifying the functional...
    Resource Type:
    Masters Thesis
    Full Text:
    pxip + �i = xTi β + �i, i = 1, . . . , n, (2.1) and the closed form: y = XTβ + �, (2.2) where yi

  • Semantic image segmentation using domain constraints

    Creator:
    Roy, Anirban
    Abstract:
    This dissertation addresses the problem of semantic labeling of image pixels. In the course of our work, we considered different types of semantic labels, including object classes (e.g., car, person), 3D depth values (in the range 0 to 80 meters), and affordance classes (e.g., walkable, sittable). Semantic pixel labeling is...
    Resource Type:
    Dissertation
    Full Text:
    organized in a graph, G = (V,E). V is a set of nodes, i = 1, . . . , n, |V | = n, corresponding to

  • New Directions in Search-based Structured Prediction: Multi-Task Learning and Integration of Deep Models

    Creator:
    Ma, Chao
    Abstract:
    This thesis studies the problem of structured prediction (SP), where the agent needs to predict a structured output for a given structured input (e.g., Part-of-Speech tagging sequence for an input sentence). Many important applications including machine translation in natural language processing (NLP) and image interpretation in computer vision can be...
    Resource Type:
    Dissertation

  • Computational Elucidation of the Regulatory SNPs in the Non-Coding Regions of the Human Genome

    Creator:
    Yao, Yao
    Abstract:
    We describe a series of novel computational models, CERENKOV (Computational Elucidation of the REgulatory NonKOding Variome) and its successors CERENKOV2, CERENKOV3, and Convolutional CERENKOV3, for discriminating regulatory single nucleotide polymorphisms (rSNPs) from non-regulatory SNPs within non-coding genetic loci. The CERENKOV models are designed for recognizing rSNPs in the context of...
    Resource Type:
    Dissertation

  • Information-theoretic Approach to Design and Evaluate Privacy-preserving and Fair Frameworks for Continuous High-dimensional Data

    Creator:
    Alsulaimawi, Zahir Ahmed Hussein
    Abstract:
    Deep learning is becoming the latest trend in sensitive applications, such as healthcare, criminal justice, and finance. As these new applications emerge, adversaries are circumventing them. Further, there have been concerns about the possibility of bias and discrimination in predictive applications. In order to address these issues, we propose an...
    Resource Type:
    Dissertation
    Full Text:
    data set of n pair (x1,y1) , . . . ,(xn,yn) . A model, f : X → Y , is called a classification function

  • Relation extraction with automatic ontonotes annotation and ETC

    Creator:
    Sauer, Andrew
    Abstract:
    Intuitively, it seems as though natural language processing tasks might benefit from explicit representations of the syntactic and semantic properties of text. Ontonotes is a dataset which attempts to annotate texts, to represent as much as possible of the meaning of the text explicitly within the annotation. Many tools exist...
    Resource Type:
    Honors College Thesis
    Full Text:
    (n,n), where n is the length of the global input. For 0<=x<n, 0<=y<n, the entry (x,y) represents a