In Oregon perennial and annual grass seed cropping systems conservation management practices and their impacts on soil health and soil microbial community is not well understood. There is strong motivation to employ conservation tillage and other conservation practices to curb atmospheric carbon levels and improve soil health. However, the few...
Analysis of observations on sequential events over time is common in real life. Sequential measurements over time describing the behavior of systems are usually called time series data, which have been collected in a wide range of disciplines. Over the years there have been multiple research areas in studying stochastic...
Agent-based models (ABM) are widely used in network data analysis, and due to their simple structures and sophisticated outcomes, they serve as good tools in understanding the dynamics in networks. In this thesis, we develop an agent-based dynamic network model, and show that it can replicate the expected degree distribution...
In areas such as spatial analysis and time series analysis, it is essential to understand and quantify spatial or temporal heterogeneity. In this dissertation, we focus on a spatially varying coefficient model, in which spatial heterogeneity is accommodated by allowing the regression coefficients to vary in a given spatial domain....
Agricultural and companion animals are integral to our way of life as they provide us with nourishment, financial resources, transportation, and companionship. However, pets, managed animals in the agricultural industry, as well as wild populations of food animals are all subject to health and mortality risks. The gut microbiome is...
Coniferous trees are a major North American crop that has been intensively managed for its commercial value, while also serving as critical habitat for abundant wildlife and as carbon sinks. Having diverse functions, North American temperate coniferous forests have become a research hotspot for numerous scientific studies aiming to integrate...
In many scientific settings, investigators are interested in the effect of a new treatment. To have a point of comparison data is collected from patients before treatment groups are assigned. When seeking to test the presence of a significant treatment effect it may be unclear how baseline measurements should be...
Diatoms play a major role in ocean biogeochemical cycles and are important tools in bioengineering for natural products and nanotechnology. Diatoms and other algae growing at varying resource-limited growth rates allocate carbon to different metabolic pathways to optimize growth; however, the molecular mechanisms controlling these pathway gating strategies are not...
This study investigates methods of multivariate regression analysis and their applications to biological data. It provides an overview of methods of reduced rank regression and sparse multivariate regression, including their motivations, methods, and applications. It also implements a form of sparse regression known as Regularized Multivariate Regression for Identifying Master...
Asphalt concrete fatigue cracking is recognized as a major distress mode in the U.S. The widespread nature of this distress and the data from agency Pavement Management Systems (PMS) suggest that it is an issue with asphalt mixture design and production processes and is not a problem specific to certain...