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Filtering by: Creator Deinzer, Max L. Remove constraint Creator: Deinzer, Max L. Committee Member Ramsey, Stephen Remove constraint Committee Member: Ramsey, Stephen Degree Level Bachelor's Remove constraint Degree Level: Bachelor's

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  • The Dynamics of Random Pulse-Coupled Oscillator Networks

    Creator:
    Kadhim, Kyra L.
    Abstract:
    The pulse-coupled oscillator model is widely used to simulate the dynamics of neural systems. For networks with particular internal (Mirollo-Strogatz) dynamics, I will define three broad patterns of collective behaviors found in literature in terms of inter-spike interval (ISI) statistics. These patterns are i) temporally-regular, characterized by all oscillators in...
    Resource Type:
    Honors College Thesis
    Full Text:
    graphs would not arise; the characteristic path length L(p) and clustering coefficient C(p) statistics

  • Transformers for representing microbiome data: an empirical evaluation

    Creator:
    Varma, Rohan
    Abstract:
    As the link between human microbiomes and health has become more established, the interest in applying statistical approaches to microbiome data to understand the mechanisms behind these links has grown. However, microbiome data is often of unmanageable size, and consequently, producing quality lower dimensional representations of samples is a significant...
    Resource Type:
    Honors College Thesis
    Full Text:
    , matching the default max sequence length transformers allow on NLP tasks. 4.2 Training Details 4.2.1

  • Classification and Analysis of Nucleotide - Nucleotide Interactions in RNA

    Creator:
    Rouches, Mason
    Abstract:
    Base-pairing interaction are the fundamental blocks of an RNA structure. With increased ability to determine the structure of RNA molecules, an accurate and informative way of classifying these interactions would help to study RNA structure at many levels. Apart from the well-known complementary base pairs and wobble pairs, other interactions...
    Resource Type:
    Honors College Thesis
    Full Text:
    validation of the training set was used to tune parameters of max depth, objective function, and

  • Position-Dependent Codon Usage Bias in the Human Transcriptome

    Creator:
    Subramanian, Kaavya
    Abstract:
    All life depends on the reliable translation of RNA to protein according to complex interactions between translation machinery and RNA sequence features. While ribosomal occupancy and codon frequencies vary across coding regions, well-established metrics for computing coding potential of RNA do not capture such positional dependence. Here, we investigate position-dependent...
    Resource Type:
    Honors College Thesis