Index Catalog // ScholarsArchive@OSU

Understanding chlamydial biology through genome sequencing and comparative genomics

Creator:: Jeffrey, Brendan
Abstract:: The human pathogen Chlamydia trachomatis displays different phenotypes between serovars both in vivo and in vitro. The study of chlamydial biology has been hampered by the lack of a tractable genetic system. Here, chlamydial isolates with known phenotypes as well as strains generated though recombination were fully sequenced to address...
Resource Type:: Dissertation
Full Text:: Biology presented on June 2, 2011. Title: Understanding Chlamydial Biology Through Genome Sequencing

Genome-enabled investigation of the minimal growth requirements andphosphate metabolism for Pelagibacter marine bacteria

Creator:: Carini, Paul J.
Abstract:: Members of the SAR11 clade of heterotrophic α-proteobacteria are ubiquitous and abundant in the world's oceans where they are thought to play a pivotal role in the global carbon cycle. The first SAR11 bacterium cultivated in vitro, 'Candidatus Pelagibacter ubique' HTCC1062 (Ca. P. ubique), was isolated by dilution into sterile...
Resource Type:: Dissertation
Full Text:: presented on May 23, 2013. Title: Genome-Enabled Investigation of the Minimal Growth Requirements and

Laboratory studies of growth conditions of Vibrio parahaemolyticus in Pacific oyster (Crassostrea gigas) with international considerations to shellfish-associated illnesses in South Korea

Creator:: Lee, Jeehye
Abstract:: Vibrio parahaemolyticus, a naturally occurring halophilic pathogen, is seasonally abundant in marine and estuarine environments. It is also the leading cause of gastroenteritis in humans world-wide. Numerous outbreak incidences associated with the pathogenic Vibrio parahaemolyticus contaminations in oyster products have raised public-health concerns as well as economic challenges to the...
Resource Type:: Undergraduate Thesis
Full Text:: BioResource Research, Toxicology and Water Resource Options Presented March 16th, 2009

Characterization of the pathogenicity and phylogeny of members of the Rhodococcus genus

Creator:: Creason, Allison L.
Abstract:: Plant pathogenic Rhodococcus species are persistent pathogens able to cause severe growth deformities on a large range of hosts. The most well studied species, R. fascians is predicted by current models to synthesize a mixture of cytokinins that act to directly perturb the hosts' hormone balances, which results in abnormal...
Resource Type:: Dissertation
Full Text:: genome sequences from over 20 isolates of Rhodococcus to challenge the current virulence model and

Bacterial community analysis, new exoelectrogen isolation and enhanced performance of microbial electrochemical systems using nano-decorated anodes

Creator:: Xu, Shoutao
Abstract:: Microbial electrochemical systems (MESs) have attracted much research attention in recent years due to their promising applications in renewable energy generation, bioremediation, and wastewater treatment. In a MES, microorganisms interact with electrodes via electrons, catalyzing oxidation and reduction reactions at the anode and the cathode. The bacterial community of a...
Resource Type:: Dissertation
Full Text:: Frank W.R. Chaplen Microbial electrochemical systems (MESs) have attracted much research attention in

Comparative genomics of Vibrio and characterizing microbial communities at a shellfish hatchery

Creator:: Delgado, Hanna
Abstract:: Vibrio bacteria are commonly found in freshwater, marine, and estuarine environments. Members of this genus can exist in commensal relationships with marine animals or as planktonic bacteria, however, they are well known for their roles as pathogens towards humans and animals. In this dissertation, I investigated aspects of host-bacteria relationships...
Resource Type:: Dissertation
Full Text:: virulence genes involved in disease are often variable or undefined. In my first research chapter, I

Investigation of unique marine environments for microbial natural products

Creator:: Thornburg, Christopher C.
Abstract:: Metagenomics has revealed that the marine microbial biosphere is immensely more diverse than originally considered, and is an almost untapped reservoir for the potential discovery of microbial natural products. Despite numerous advances in culturing, biosynthetic engineering and genomic-based screening efforts to uncover much of this diversity in relatively accessible environments,...
Resource Type:: Dissertation
Full Text:: marine organisms. The focus of this research was to establish a culture repository of microorganisms

The role of Salmonella typhimurium type three secretion system (T3SS) and effector proteins in chromatophore cell response.

Creator:: Farhad, Mohammad
Abstract:: Bacterial contamination of food poses a great risk to human health worldwide. A chromatophore cell-based biosensor, utilizing B. splendens erythrophore cells, is an emerging technology that has shown potential to detect bacterial toxicity based on function-dependent mechanisms. Previous studies have investigated the response of erythrophore cells to foodborne pathogens, pesticides,...
Resource Type:: Masters Thesis
Full Text:: pigment organelle aggregation in erythrophore cells. Results from this research effort suggest that hilD

Construction of a model organism for performing calcium carbonate precipitation in a porous media reactor

Creator:: Kaufman, Megan J.
Abstract:: Aquifers are an important storage location and source of fresh groundwater. They may become polluted by a number of contaminants including mobile divalent radionuclides such as strontium-90 which is a byproduct of uranium fission. A method for remediating such divalent radionuclides is sequestration through co-precipitation into calcium carbonate. Calcium carbonate...
Resource Type:: Masters Thesis
Full Text:: Center for Genome Research and Biocomputing at Oregon State University. Samples were run on an ABI

Investigating Vibrio parahaemolyticus interactions with the Pacific oyster, Crassostrea gigas

Creator:: Aagesen, Alisha M.
Abstract:: Vibrio parahaemolyticus is a Gram-negative, halophilic, human pathogenic bacterium ubiquitous in the marine environment. Like many Vibrio species, V. parahaemolyticus commonly associates with shellfish, particularly oysters. Ingestion of a raw or under cooked oysters contaminated with V. parahaemolyticus can cause gastroenteritis, which is typically self-limiting and rarely causes death. Globally,...
Resource Type:: Dissertation
Full Text:: baked goods. I also need to thank the various people in the Veterinary Research Laboratory building

ScholarsArchive@OSU

Understanding chlamydial biology through genome sequencing and comparative genomics

Genome-enabled investigation of the minimal growth requirements andphosphate metabolism for Pelagibacter marine bacteria

Laboratory studies of growth conditions of Vibrio parahaemolyticus in Pacific oyster (Crassostrea gigas) with international considerations to shellfish-associated illnesses in South Korea

Characterization of the pathogenicity and phylogeny of members of the Rhodococcus genus

Bacterial community analysis, new exoelectrogen isolation and enhanced performance of microbial electrochemical systems using nano-decorated anodes

Comparative genomics of Vibrio and characterizing microbial communities at a shellfish hatchery

Investigation of unique marine environments for microbial natural products

The role of Salmonella typhimurium type three secretion system (T3SS) and effector proteins in chromatophore cell response.

Construction of a model organism for performing calcium carbonate precipitation in a porous media reactor

Investigating Vibrio parahaemolyticus interactions with the Pacific oyster, Crassostrea gigas

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