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Filtering by: Creator Brooks, J. R. Remove constraint Creator: Brooks, J. R. Committee Member Tadepalli, Prasad Remove constraint Committee Member: Tadepalli, Prasad Committee Member Fern, Xiaoli Remove constraint Committee Member: Fern, Xiaoli

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  • ThreshKnot: Thresholded ProbKnot for Improved RNA Secondary Structure Prediction

    Creator:
    Zhang, Liang
    Abstract:
    RNA structure prediction is a challenging problem, especially with pseudoknots. Recently, there has been a shift from the classical minimum free energy-based methods (MFE) to partition function-based ones that assemble structures based on base-pairing probabilities. Two typical examples of the latter group are the popular maximum expected accuracy (MEA) method...
    Resource Type:
    Masters Thesis
    Full Text:
    . J. Becka, M. Biesiada, M. J. Boniecki, J. M. Bujnicki, S.-J. Chen, C. Y. Cheng, F.-C. Chou, A. R

  • Machine learning for improving the quality of citizen science data

    Creator:
    Yu, Jun
    Abstract:
    Citizen Science is a paradigm in which volunteers from the general public participate in scientific studies, often by performing data collection. This paradigm is especially useful if the scope of the study is too broad to be performed by a limited number of trained scientists. Although citizen scientists can contribute...
    Resource Type:
    Dissertation
    Full Text:
    species. Note that the link from Ej to Yit only exists if birder j submits the checklist corresponding to

  • Improving automated email tagging with implicit feedback

    Creator:
    Sorower, Mohammad Shahed
    Abstract:
    Machine learning systems are generally trained offline using ground truth data that has been labeled by experts. However, these batch training methods are not a good fit for many applications, especially in the cases where complete ground truth data is not available for offline training. In addition, batch methods do...
    Resource Type:
    Dissertation
    Full Text:
    . `Message R/O' indicates the total number of times a message was opened in Outlook Explorer or in Outlook

  • Interpretable Machine Learning: Applications in Biology and Genomics

    Creator:
    Danaee, Padideh
    Abstract:
    Machine learning (ML) and deep learning (DL) models impact our daily lives with applications in natural language modeling, image analysis, healthcare, genomics, and bioinformatics. The exponential growth of biological sequence data necessitates accompanying advances in computational methods. Although deep learning is highly effective for detecting and classifying biological sequences, challenges...
    Resource Type:
    Dissertation
    Full Text:
    that has base pair (i, j) with all other base pairs such that i < i0 < j0 < j as with (i0, j0), or i

  • Parsing with Recurrent Neural Networks

    Creator:
    Cross, James Henry, III
    Abstract:
    Machine learning models for natural language processing have traditionally relied on large numbers of discrete features, built up from atomic categories such as word forms and part-of-speech labels, which are considered completely distinct from each other. Recently however, the advent of dense feature representations coupled with deep learning techniques has...
    Resource Type:
    Dissertation
    Full Text:
    -standard dependency parsing system [42]. Stack S is a list of heads, j is the start index of the queue, and

  • Advances in Simultaneous Translation

    Creator:
    Zheng, Renjie
    Abstract:
    Simultaneous translation, which translates concurrently with the source language speech, is widely used in many scenarios including multilateral organizations. However, it is well known to be one of the most challenging tasks for humans due to the simultaneous perception and production in two languages. On the other hand, simultaneous translation...
    Resource Type:
    Dissertation
    Full Text:
    words). . . . . . . 20 2.3 An example for READ/WRITE action sequence. R represents READ and W

  • New learning modes for sequential decision making

    Creator:
    Judah, Kshitij
    Abstract:
    This thesis considers the problem in which a teacher is interested in teaching action policies to computer agents for sequential decision making. The vast majority of policy learning algorithms o er teachers little flexibility in how policies are taught. In particular, one of two learning modes is typically considered: 1)...
    Resource Type:
    Dissertation
    Full Text:
    := T ∪ GetPracticeTrajectories(θ) 6: for i = 1:n do 7: λ = λi //choose a value of λ 8: θi = argmaxθ Jλ

  • Image features and learning algorithms for biological, generic and social object recognition

    Creator:
    Zhang, Wei
    Abstract:
    Automated recognition of object categories in images is a critical step for many real-world computer vision applications. Interest region detectors and region descriptors have been widely employed to tackle the variability of objects in pose, scale, lighting, texture, color, and so on. Different types of object recognition problems usually require...
    Resource Type:
    Dissertation
    Full Text:
    industrial R&D, documentation and the patent application process, which are valuable for my future career

  • Stake-Free Evaluations of Black-Box Optimization and Spatio-Temporal Graph Network Algorithms

    Creator:
    Merrill, Erich, III
    Abstract:
    Papers proposing novel machine learning algorithms tend to present the algorithm or technique in question in the best possible light. The standard practice is generally for authors to emphasize their proposed algorithms' performance in the precise setting where it is maximally impressive, often by only fully evaluating their best known...
    Resource Type:
    Dissertation
    Full Text:
    Background We consider optimizing an unknown function f : X → R where X is a compact d- dimensional subset

  • Action Segmentation in Videos: Deep Models, Prediction Diffusion, and Deep-Temporal Augmentations

    Creator:
    Aziere, Nicolas
    Abstract:
    This paper addresses the high model complexity and overconfident frame labeling of state-of-the-art (SOTA) action segmenters. Their complexity is typically justified by the need to sequentially refine action segmentation through multiple stages of a deep architecture. However, this multistage refinement does not take into account uncertainty of frame labeling predicted...
    Resource Type:
    Dissertation