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Filtering by: Creator Anderson, David M. (David Matthew), 1964- Remove constraint Creator: Anderson, David M. (David Matthew), 1964- Committee Member Tadepalli, Prasad Remove constraint Committee Member: Tadepalli, Prasad Degree Name Doctor of Philosophy (Ph.D.) Remove constraint Degree Name: Doctor of Philosophy (Ph.D.)

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  • Computational Approaches for RNA Structure Prediction with Dynamic Programming and Deep Neural Networks

    Creator:
    Deng, Dezhong
    Abstract:
    Our goal is to build a system to model the RNA sequences that reveals their structural information by using efficient dynamic programming algorithms and deep learning approaches. We aim to 1) achieve linear-time for RNA secondary structure prediction based on existing minimum free energy models; 2) utilize deep neural networks...
    Resource Type:
    Dissertation
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    Abstract approved: David A. Hendrix Our goal is to build a system to model the RNA sequences that reveals

  • Conceptual Representations within the Social and Material Contexts of an Engineering Workplace and Academic Environments

    Creator:
    Barner, Matthew S.
    Abstract:
    Situated cognition theory emphasizes the role that social and material contexts have on learning and knowledge application. Several studies of engineering workplace environments have noted differences between the social and material contexts of the workplace and those of undergraduate engineering education. No existing research has studied the social and material...
    Resource Type:
    Dissertation
    Full Text:
    AN ABSTRACT OF THE DISSERTATION OF Matthew S

  • Interpretable Machine Learning: Applications in Biology and Genomics

    Creator:
    Danaee, Padideh
    Abstract:
    Machine learning (ML) and deep learning (DL) models impact our daily lives with applications in natural language modeling, image analysis, healthcare, genomics, and bioinformatics. The exponential growth of biological sequence data necessitates accompanying advances in computational methods. Although deep learning is highly effective for detecting and classifying biological sequences, challenges...
    Resource Type:
    Dissertation
    Full Text:
    Machine Learning: Applications in Biology and Genomics Abstract approved: David A. Hendrix Machine

  • Knowledge Base Completion Leveraging Natural Language Data

    Creator:
    Shahbazi, Hamed
    Abstract:
    Information about named entities (real-world objects) is usually harvested from different sources and organized as a multiple relational directed graph in Knowledge Bases (KBs). KBs play essential roles in many NLP modules including question answering, fact-checking, search engines, etc. KBs are big but still incomplete: relational information among entities is...
    Resource Type:
    Dissertation
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    2.2 Global accuracy minus local accuracy per bin of rarity measure Pr(e|m) which is scaled to (0, 100

  • Explanations and Processes to Enable Humans to Assess AI with Respect to Manipulable Properties

    Creator:
    Dodge, Jonathan E.
    Abstract:
    Assessing AI systems is difficult. Humans rely on AI systems in increasing ways, both visible and invisible, meaning a variety of stakeholders need a variety of assessment tools (e.g., a professional auditor, a developer, and an end user all have different needs). We posit that it is possible to provide...
    Resource Type:
    Dissertation
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    taught me that learning is a great pastime; Andrew Anderson, my colleague in PhD trials and tribulations

  • Investigating Latent State and Uncertainty Representations in Reinforcement Learning

    Creator:
    Koul, Anurag
    Abstract:
    Learning latent space representations of high-dimensional world states has been at the core of recent rapid growth in reinforcement learning(RL). At the same time, RL algo- rithms have suffered from ignored uncertainties in the predicted estimates of model-free or model-based methods. In our work, we investigate both of these aspects...
    Resource Type:
    Dissertation
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    David Zerbe as well as all my housemates in the “International House”. Over the years, meeting people

  • Semantic embodied navigation : developing agents that navigate from language and vision

    Creator:
    Krantz, Jacob
    Abstract:
    Autonomous robotic agents are on their way to becoming in-home personal assistants, construction assistants, and warehouse workers. The degree of autonomy of such systems is reflected by the manner in which we specify goals to them; the abstraction of low-level commands to high-level goals goes hand-in-hand with increased autonomy. In...
    Resource Type:
    Dissertation
    Full Text:
    collaborations and Peter Anderson and Jesse Thomason for their advising insights and generosity. I thank the

  • Incorporating and Learning Behavior Constraints for Sequential Decision Making

    Creator:
    Pinto, Jervis
    Abstract:
    Writing a program that performs well in a complex environment is a challenging task. In such problems, a method of deterministic programming combined with reinforcement learning (RL) can be helpful. However, current systems either force developers to encode knowledge in very specific forms (e.g., state-action features), or assume advanced RL...
    Resource Type:
    Dissertation
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    ); reward(2); for (i=1; im

  • A General Purpose Agent-Based Blackboard Optimization Method Applied to Sodium Fast Reactor Design and Analysis

    Creator:
    Stewart, Ryan H.
    Abstract:
    We present a novel multi-objective optimization methodology built upon a multi-agent blackboard framework. This multi-agent blackboard system (MABS) synthesizes blackboard architectures, multi-agent environments, and optimization theory. The blackboard architecture creates the framework for initializing, storing, and solving a multi-objective optimization problem. Multiple agents allow for an optimization problem to be...
    Resource Type:
    Dissertation
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    = 1, 2, ...,m hl(x) = 0, l = 1, 2, ..., e (1.2) Each design represents a solution, where (x̂) would

  • Machine learning methods for public policy : simulation, optimization, and visualization

    Creator:
    McGregor, Sean
    Abstract:
    Society faces many complex management problems, particularly in the area of shared public resources such as ecosystems. Existing decision making processes are often guided by personal experience and political ideology rather than state-of-the-art scientific understanding. This dissertation envisions a future in which multiple stakeholders are provided with computational tools for...
    Resource Type:
    Dissertation
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    designated start state distribution [7, 48] M = 〈S,A, P,R, γ, P0〉. S is a finite set of states of the world