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Filtering by: Creator Slegers, Nathan J. Remove constraint Creator: Slegers, Nathan J. Committee Member Tadepalli, Prasad Remove constraint Committee Member: Tadepalli, Prasad

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  • Computational Approaches for RNA Structure Prediction with Dynamic Programming and Deep Neural Networks

    Creator:
    Deng, Dezhong
    Abstract:
    Our goal is to build a system to model the RNA sequences that reveals their structural information by using efficient dynamic programming algorithms and deep learning approaches. We aim to 1) achieve linear-time for RNA secondary structure prediction based on existing minimum free energy models; 2) utilize deep neural networks...
    Resource Type:
    Dissertation
    Full Text:
    the Hendrix Lab, including Padideh Danaee, Lillian Padgitt- Cobb, Rosalyn Fey, Juneki Hong, Nathan

  • Deep Learning for Human and Biological Languages

    Creator:
    Hong, Junki
    Abstract:
    We explore the application of deep learning to the disparate fields of natural language processing and computational biology. Both the sentences uttered by humans as well as the RNA and protein sequences found within the cells of their bodies can be considered formal languages in computer science, as sets of...
    Resource Type:
    Dissertation
    Full Text:
    , Patrick Morar, Lillian Padgitt-Cobb, Joseph Valencia, and Nathan Waugh. From the Huang lab, this includes

  • Computing Resource Usage as a Factor of Student Success

    Creator:
    Moissinac, Béatrice
    Abstract:
    Learning Analytics and other branches of Educational Research such as Computing Education Research (CER) implicitly assume that students, especially college students, have no barriers to access learning platforms or software packages. This assumption may be attributed to such pervasive beliefs such as "everyone has a device", or "everyone can access...
    Resource Type:
    Dissertation
    Full Text:
    Price, Nathan Power, Johan Jansen. As well as the successive CIOs of OSU, Lois Brook, followed by Jon

  • Structured learning with latent variables : theory and algorithms

    Creator:
    Zhao, Kai
    Abstract:
    Most tasks in natural language processing (NLP) try to map structured input (e.g., sentence or word sequence) to some form of structured output (tag sequence, parse tree, semantic graph, translated/paraphrased/compressed sentence), a problem known as “structured prediction”. While various learning algorithms such as the perceptron, maximum entropy, and expectation-maximization have...
    Resource Type:
    Dissertation
    Full Text:
    +2 . . . yi) = max y1,...,yi−k i∑ j=1 fw(yj ;x, yj−k+1 . . . yj−1) = max yi−k+1 Gw(x, yi−k+1

  • Interpretable Machine Learning: Applications in Biology and Genomics

    Creator:
    Danaee, Padideh
    Abstract:
    Machine learning (ML) and deep learning (DL) models impact our daily lives with applications in natural language modeling, image analysis, healthcare, genomics, and bioinformatics. The exponential growth of biological sequence data necessitates accompanying advances in computational methods. Although deep learning is highly effective for detecting and classifying biological sequences, challenges...
    Resource Type:
    Dissertation
    Full Text:
    few years: Lillian K Padgitt-Cobb, Rosalyn Fey, Dezhong Deng, Nathan Waugh, Junki Hong, and Jimmy

  • Improving and Understanding Deep Models for Natural Language Comprehension

    Creator:
    Ghaeini, Reza
    Abstract:
    Natural Language Comprehension is a challenging domain of Natural Language Processing. To improve a model’s language comprehension/understanding, one approach would be to enrich the structure of the model to enhance its capability in learning the latent rules of the language. In this dissertation, we will first introduce several deep models...
    Resource Type:
    Dissertation

  • Conceptual Representations within the Social and Material Contexts of an Engineering Workplace and Academic Environments

    Creator:
    Barner, Matthew S.
    Abstract:
    Situated cognition theory emphasizes the role that social and material contexts have on learning and knowledge application. Several studies of engineering workplace environments have noted differences between the social and material contexts of the workplace and those of undergraduate engineering education. No existing research has studied the social and material...
    Resource Type:
    Dissertation

  • Explanations and Processes to Enable Humans to Assess AI with Respect to Manipulable Properties

    Creator:
    Dodge, Jonathan E.
    Abstract:
    Assessing AI systems is difficult. Humans rely on AI systems in increasing ways, both visible and invisible, meaning a variety of stakeholders need a variety of assessment tools (e.g., a professional auditor, a developer, and an end user all have different needs). We posit that it is possible to provide...
    Resource Type:
    Dissertation
    Full Text:
    . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 172 I Log Appendix - Moving with Heuristic Agents . . . . . . . . . . . . . . . . 174 J Data