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  • Variant Annotation

    Creator:
    He, Jun
    Abstract:
    With the development of technologies in genome sequencing and variant detection, a huge number of variants are detected. To further analyze the variants, it requires an efficient tool to annotate the functional effect of variants. This project managed to develop an efficient program to annotate the functional effect of variants...
    Resource Type:
    Capstone Project
    Full Text:
    approved: Stephen Ramsey With the development of technologies in genome sequencing and variant detection

  • Analytical Methods for Improving Causal Inference

    Creator:
    Sinha, Meghamala
    Abstract:
    Causal inference is an important analytical tool to bridge the gap between prediction and decision-making. However, learning a causal network solely from data is a challenging task. In this work, various techniques have been explored for a better and improved causal network learning from data. Firstly, the problem of learning...
    Resource Type:
    Dissertation
    Full Text:
    : Analytical Methods for Improving Causal Inference Abstract approved: Stephen A. Ramsey Causal inference is

  • Deep Learning for Human and Biological Languages

    Creator:
    Hong, Junki
    Abstract:
    We explore the application of deep learning to the disparate fields of natural language processing and computational biology. Both the sentences uttered by humans as well as the RNA and protein sequences found within the cells of their bodies can be considered formal languages in computer science, as sets of...
    Resource Type:
    Dissertation
    Full Text:
    Adenine (A) prefers to bind with Uracil (U) and Cytosine (C) prefers to bind with Guanine (G). The

  • Learning with Limited Labeled Data in Natural Language Processing

    Creator:
    Obeidat, Rasha
    Abstract:
    The advent of deep learning models leads to a substantial improvement in a wide range of NLP tasks, achieving state-of-art performances without any hand-crafted features. However, training deep models requires a massive amount of labeled data. Labeling new data as a new task or domain emerges consumes time and efforts...
    Resource Type:
    Dissertation
    Full Text:
    . Liang Huang, Prof Stephen A Ramsey, Prof. Brett Tyler, and Prof. Sushma Naithani, for their insight

  • Scale effects on reinforced concrete beams strengthened for shear with discrete externally bonded carbon fiber-reinforced polymer U-wraps

    Creator:
    Dawson, Matthew Ryan
    Abstract:
    Current ACI design provisions for shear in reinforced concrete (RC) beams strengthened with externally bonded carbon fiber-reinforced polymer (CFRP) U-wraps may not adequately account for the effect of scale. This paper describes tests of 6 geometrically scaled beams to identify possible scale effects of such beams. Results indicated that effective...
    Resource Type:
    Masters Thesis
    Full Text:
    : Christopher C. Higgins Current ACI design provisions for shear in reinforced concrete (RC) beams

  • Interpretable Machine Learning: Applications in Biology and Genomics

    Creator:
    Danaee, Padideh
    Abstract:
    Machine learning (ML) and deep learning (DL) models impact our daily lives with applications in natural language modeling, image analysis, healthcare, genomics, and bioinformatics. The exponential growth of biological sequence data necessitates accompanying advances in computational methods. Although deep learning is highly effective for detecting and classifying biological sequences, challenges...
    Resource Type:
    Dissertation
    Full Text:
    applicable more broadly to other areas of data science. c�Copyright by Padideh Danaee December 6, 2019

  • Learning with Partial Supervision for Clustering and Classification

    Creator:
    Pei, Yuanli
    Abstract:
    In the field of machine learning, clustering and classification are two fundamental tasks. Traditionally, clustering is an unsupervised method, where no supervision about the data is available for learning; classification is a supervised task, where fully-labeled data are collected for training a classifier. In some scenarios, however, we may not...
    Resource Type:
    Dissertation
    Full Text:
    triplets respectively; c) active learning of pairwise constraints for clustering, where the goal is to

  • Simulator-Defined MDP Planning with Applications in Natural Resource Management

    Creator:
    Alkaee Taleghan, Majid
    Abstract:
    This work is inspired by problems in natural resource management centered on the challenge of invasive species. Computing optimal management policies for maintaining ecosystem sustainable is challenging. Many ecosystem management problems can be formulated as MDP (Markov Decision Process) planning problems. In a simulator-defined MDP, the Markovian dynamics and rewards...
    Resource Type:
    Dissertation
    Full Text:
    drawn to shrink the confidence interval as quickly as possible? (c) how can we find the optimal policy

  • Activity recognition in desktop environments

    Creator:
    Shen, Jianqiang
    Abstract:
    Knowledge workers are struggling in the information flood. There is a growing interest in intelligent desktop environments that help knowledge workers organize their daily life. Intelligent desktop environments allow the desktop user to define a set of “activities” that characterize the user’s desktop work. These environments then attempt to identify...
    Resource Type:
    Dissertation
    Full Text:
    inference algorithm [Natarajan et al., 2008]. c©Copyright by Jianqiang Shen March 19, 2009 All Rights

  • An efficient switched capacitor buck-boost voltage regulator using delta-sigma control loop

    Creator:
    Rao, Arun
    Abstract:
    Voltage converters or charge pumps find their use in many circuits. They are extensively used in hand held devices as cell phones, pagers, PDA's and laptops. Some of the important issues relating to design of voltage regulators for handheld devices are size, efficiency and noise. Another important factor to be...
    Resource Type:
    Masters Thesis
    Full Text:
    expected. V 'load (Ch0ld + C) Ch0ld + C h 2 8fC(2C + Ch0ld) 1 + 3C + Chold ( .) The time domain