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Creator:: Dubbels, Bradley L., Sayavedra-Soto, Luis A., Bottomley, Peter J., and Arp, Daniel J.
Abstract:: The placement of ‘Pseudomonas butanovora’ in the genus Thauera was proposed previously, based on 16S rRNA gene sequence analysis, upon further studies of taxonomical characteristics. In this study, physiological characteristics and DNA–DNA reassociation data are presented and the transfer of ‘P. butanovora’ to the genus Thauera is proposed. The original...
Resource Type:: Article
Full Text:: bacterium previously referred to as ‘Pseudomonas butanovora’ Bradley L. Dubbels,1 Luis A. Sayavedra-Soto,1

Creator:: Cooley, Richard B., Dubbels, Bradley L., Sayavedra-Soto, Luis A., Bottomley, Peter J., and Arp, Daniel J.
Abstract:: Soluble butane monooxygenase (sBMO), a three-component di-iron monooxygenase complex expressed by the C2–C9 alkane-utilizing bacterium Thauera butanivorans, was kinetically characterized by measuring substrate specificities for C1–C5 alkanes and product inhibition profiles. sBMO has high sequence homology with soluble methane monooxygenase (sMMO) and shares a similar substrate range, including gaseous and...
Resource Type:: Article
Full Text:: . Dubbels,2 Luis A. Sayavedra-Soto,2 Peter J. Bottomley3 and Daniel J. Arp2 Correspondence Daniel J. Arp

Creator:: Zhalnina, Kateryna, de Quadros, Patricia D., Gano, Kelsey A., Davis-Richardson, Austin, Fagen, Jennie R., Brown, Christopher T., Giongo, Adriana, Drew, Jennifer C., Sayavedra-Soto, Luis A., Arp, Daniel J., Camargo, Flavio A. O., Daroub, Samira H., Clark, Ian M., McGrath, Steve P., Hirsch, Penny R., and Triplett, Eric W.
Abstract:: Agricultural land management, such as fertilization, liming, and tillage affects soil properties, including pH, organic matter content, nitrification rates, and the microbial community. Three different study sites were used to identify microorganisms that correlate with agricultural land use and to determine which factors regulate the relative abundance of the microbial...
Resource Type:: Article
Full Text:: . Brown1, Adriana Giongo1, Jennifer C. Drew 1, Luis A. Sayavedra-Soto 3, Dan J. Arp3, Flavio A. O. Camargo

Creator:: Taylor, Anne E., Vajrala, Neeraja, Giguere, Andrew T., Gitelman, Alix I., Arp, Daniel J., Myrold, David D., Sayavedra-Soto, Luis, and Bottomley, Peter J.
Abstract:: Ammonia (NH₃)-oxidizing bacteria (AOB) and thaumarchaea (AOA) co-occupy most soils, yet no short-term growth-independent method exists to determine their relative contributions to nitrification in situ. Microbial monooxygenases differ in their vulnerability to inactivation by aliphatic n-alkynes, and we found that NH₃ oxidation by the marine thaumarchaeon Nitrosopumilus maritimus was unaffected...
Resource Type:: Article
Full Text:: . Regala, V. Lao, M. Land, L. Hauser, A. Hooper, M. Klotz, J. Norton, L. Sayavedra-Soto, D. Arciero, N

Creator:: Bollmann, Annette, Sedlacek, Christopher J., Norton, Jeanette, Laanbroek, Hendrikus J., Suwa, Yuichi, Stein, Lisa Y., Klotz, Martin G., Arp, Daniel J., Sayavedra-Soto, Luis, Lu, Megan, Bruce, David, Detter, Chris, Tapia, Roxanne, Han, James, Woyke, Tanja, Pitluck, Sam, Pennacchio, Len, Nolan, Matt, Land, Miriam L., Huntemann, Marcel, Deshpande, Shweta, Han, Cliff, Chen, Amy, Kyrpides, Nikos, Movromatis, Konstantinos, Markowitz, Victor, Szeto, Ernest, Ivonova, Natalia, Mikhailova, Natalia, Pagani, Ioanna, Pati, Amrita, Peters, Lin, Ovchinnikova, Galina, Goodwin, Lynne A., and Lucas, Susan M.
Abstract:: Nitrosomonas sp. Is79 is a chemolithoautotrophic ammonia-oxidizing bacterium that belongs to the family Nitrosomonadaceae within the phylum Proteobacteria. Ammonia oxidation is the first step of nitrification, an important process in the global nitrogen cycle ultimately resulting in the production of nitrate. Nitrosomonas sp. Is79 is an ammonia oxidizer of high...
Resource Type:: Article
Full Text:: Acids Res 2012; 40:D571. PubMed http://dx.doi.org/10.1093/nar/gkr1100 37. Arp D, Sayavedra-Soto L

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