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Creator:: Mellbye, Brett L., Giguere, Andrew, Chaplen, Frank, Bottomley, Peter J., and Sayavedra-Soto, Luis A.
Abstract:: Nitrosomonas europaea is a chemolithoautotrophic bacterium that oxidizes ammonia (NH₃) to obtain energy for growth on carbon dioxide (CO₂) and can also produce nitrous oxide (N₂O), a greenhouse gas. We interrogated the growth, physiological, and transcriptome responses of N. europaea to conditions of replete (>5.2 mM) and limited inorganic carbon...
Full Text:: " >NE0056 mutY 0.06 1.53 0.0000345597 0.38 1.24 0.0000157166 0.35 -1.23 77026 78160 77027 78160 A/G-specific

Creator:: Mellbye, Brett L., Giguere, Andrew, Chaplen, Frank, Bottomley, Peter J., and Sayavedra-Soto, Luis A.
Abstract:: Nitrosomonas europaea is a chemolithoautotrophic bacterium that oxidizes ammonia (NH₃) to obtain energy for growth on carbon dioxide (CO₂) and can also produce nitrous oxide (N₂O), a greenhouse gas. We interrogated the growth, physiological, and transcriptome responses of N. europaea to conditions of replete (>5.2 mM) and limited inorganic carbon...
Full Text:: Giguereb, Frank Chaplenc, Peter J. Bottomleyb,d, Luis A. Sayavedra-Sotoa#. aDepartment of Botany and

Creator:: Mellbye, Brett L., Giguere, Andrew, Chaplen, Frank, Bottomley, Peter J., and Sayavedra-Soto, Luis A.
Abstract:: Nitrosomonas europaea is a chemolithoautotrophic bacterium that oxidizes ammonia (NH₃) to obtain energy for growth on carbon dioxide (CO₂) and can also produce nitrous oxide (N₂O), a greenhouse gas. We interrogated the growth, physiological, and transcriptome responses of N. europaea to conditions of replete (>5.2 mM) and limited inorganic carbon...
Full Text:: Andrew Giguere,b Frank Chaplen,c Peter J. Bottomley,b,d Luis A. Sayavedra-Sotoa Department of Botany and

Creator:: Mellbye, Brett L., Giguere, Andrew, Chaplen, Frank, Bottomley, Peter J., and Sayavedra-Soto, Luis A.
Abstract:: Nitrosomonas europaea is a chemolithoautotrophic bacterium that oxidizes ammonia (NH₃) to obtain energy for growth on carbon dioxide (CO₂) and can also produce nitrous oxide (N₂O), a greenhouse gas. We interrogated the growth, physiological, and transcriptome responses of N. europaea to conditions of replete (>5.2 mM) and limited inorganic carbon...
Resource Type:: Article

Creator:: Taylor, Anne E., Zeglin, Lydia H., Wanzek, Thomas A., Myrold, David D., and Bottomley, Peter J.
Abstract:: It is well known that the ratio of ammonia oxidizing archaea (AOA) and bacteria (AOB) ranges widely in soils, but no data exist on what might influence this ratio, its dynamism, or how changes in relative abundance influences the potential contributions of AOA and AOB to soil nitrification. By sampling...
Resource Type:: Article
Full Text:: . Taylor1*, Lydia H. Zeglin1, Thomas A. Wanzek1, 3 David D. Myrold1, and Peter J. Bottomley1,2 4

Creator:: Dubbels, Bradley L., Sayavedra-Soto, Luis A., Bottomley, Peter J., and Arp, Daniel J.
Abstract:: The placement of ‘Pseudomonas butanovora’ in the genus Thauera was proposed previously, based on 16S rRNA gene sequence analysis, upon further studies of taxonomical characteristics. In this study, physiological characteristics and DNA–DNA reassociation data are presented and the transfer of ‘P. butanovora’ to the genus Thauera is proposed. The original...
Resource Type:: Article
Full Text:: untitled Thauera butanivorans sp. nov., a C2–C9 alkane-oxidizing

Creator:: Cooley, Richard B., Dubbels, Bradley L., Sayavedra-Soto, Luis A., Bottomley, Peter J., and Arp, Daniel J.
Abstract:: Soluble butane monooxygenase (sBMO), a three-component di-iron monooxygenase complex expressed by the C2–C9 alkane-utilizing bacterium Thauera butanivorans, was kinetically characterized by measuring substrate specificities for C1–C5 alkanes and product inhibition profiles. sBMO has high sequence homology with soluble methane monooxygenase (sMMO) and shares a similar substrate range, including gaseous and...
Resource Type:: Article
Full Text:: . Dubbels,2 Luis A. Sayavedra-Soto,2 Peter J. Bottomley3 and Daniel J. Arp2 Correspondence Daniel J. Arp

Creator:: Zeglin, L. H., Bottomley, Peter J., Jumpponen, A., Rice, C. W., Arango, M., Lindsley, A., McGowan, A., Mfombep, P., and Myrold, D. D.
Abstract:: Climate change models predict that future precipitation patterns will entail lower-frequency but larger rainfall events, increasing the duration of dry soil conditions. Resulting shifts in microbial C cycling activity could affect soil C storage. Further, microbial response to rainfall events may be constrained by the physiological or nutrient limitation stress...
Resource Type:: Article
Full Text:: composition of soil microbial communities on multiple time scales L. H. ZEGLIN,1,5 P. J. BOTTOMLEY,1,2 A

Creator:: Kageyama, Stacie A., Posavatz, Nancy R., Jones, Sarah S., Waterstripe, Kirk E., Bottomley, Peter J., Cromack Jr., Kermit, and Myrold, David D.
Abstract:: To gain a better understanding of how rapidly microbial communities respond to different magnitudes of perturbation that mimic minor or catastrophic disturbances. Two montane sites in the western Cascade Mountains of Oregon with adjacent areas of forest and meadow vegetation were studied. A reciprocal transplant experiment evaluated both minor (soil...
Resource Type:: Article
Full Text:: microbial communities in the Western Cascades of Oregon Stacie A. Kageyama & Nancy R. Posavatz & Sarah S

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