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FoxSamuelBotanyPlantPathologyParallelAnalysisRNA.pdf

Creator:: Jeong, Dong-Hoon, Schmidt, Skye A., Rymarquis, Linda A., Park, Sunhee, Ganssmann, Matthias, German, Marcelo A., Accerbi, Monica, Zhai, Jixian, Fahlgren, Noah, Fox, Samuel E., Garvin, David F., Mockler, Todd C., Carrington, James C., Meyers, Blake C., and Green, Pamela J.
Abstract:: BACKGROUND: The wild grass Brachypodium distachyon has emerged as a model system for temperate grasses and biofuel plants. However, the global analysis of miRNAs, molecules known to be key for eukaryotic gene regulation, has been limited in B. distachyon to studies examining a few samples or that rely on computational...

FoxSamuelBotanyPlantPathologyParallelAnalysisRNA_TableS1.pdf

Creator:: Jeong, Dong-Hoon, Schmidt, Skye A., Rymarquis, Linda A., Park, Sunhee, Ganssmann, Matthias, German, Marcelo A., Accerbi, Monica, Zhai, Jixian, Fahlgren, Noah, Fox, Samuel E., Garvin, David F., Mockler, Todd C., Carrington, James C., Meyers, Blake C., and Green, Pamela J.
Abstract:: BACKGROUND: The wild grass Brachypodium distachyon has emerged as a model system for temperate grasses and biofuel plants. However, the global analysis of miRNAs, molecules known to be key for eukaryotic gene regulation, has been limited in B. distachyon to studies examining a few samples or that rely on computational...

FoxSamuelBotanyPlantPathologyParallelAnalysisRNA_FigureS1.pdf

Creator:: Jeong, Dong-Hoon, Schmidt, Skye A., Rymarquis, Linda A., Park, Sunhee, Ganssmann, Matthias, German, Marcelo A., Accerbi, Monica, Zhai, Jixian, Fahlgren, Noah, Fox, Samuel E., Garvin, David F., Mockler, Todd C., Carrington, James C., Meyers, Blake C., and Green, Pamela J.
Abstract:: BACKGROUND: The wild grass Brachypodium distachyon has emerged as a model system for temperate grasses and biofuel plants. However, the global analysis of miRNAs, molecules known to be key for eukaryotic gene regulation, has been limited in B. distachyon to studies examining a few samples or that rely on computational...

Garcia-RuizHernanBotanyPlantPathologyRolesProgramming_SupportingInformation.zip

Creator:: Garcia-Ruiz, Hernan, Carbonell, Alberto, Hoyer, J. Steen, Fahlgren, Noah, Takeda, Atsushi, Giampetruzzi, Annalisa, Lowery, Nicholas, Carrington, James C., and et al.
Abstract:: In eukaryotes, ARGONAUTE proteins (AGOs) associate with microRNAs (miRNAs), short interfering RNAs (siRNAs), and other classes of small RNAs to regulate target RNA or target loci. Viral infection in plants induces a potent and highly specific antiviral RNA silencing response characterized by the formation of virus-derived siRNAs. Arabidopsis thaliana has...

Garcia-RuizHernanBotanyPlantPathologyRolesProgramming.pdf

Creator:: Garcia-Ruiz, Hernan, Carbonell, Alberto, Hoyer, J. Steen, Fahlgren, Noah, Takeda, Atsushi, Giampetruzzi, Annalisa, Lowery, Nicholas, Carrington, James C., and et al.
Abstract:: In eukaryotes, ARGONAUTE proteins (AGOs) associate with microRNAs (miRNAs), short interfering RNAs (siRNAs), and other classes of small RNAs to regulate target RNA or target loci. Viral infection in plants induces a potent and highly specific antiviral RNA silencing response characterized by the formation of virus-derived siRNAs. Arabidopsis thaliana has...

Roles and Programming of Arabidopsis ARGONAUTE Proteins during Turnip Mosaic Virus Infection

Creator:: Garcia-Ruiz, Hernan, Carbonell, Alberto, Hoyer, J. Steen, Fahlgren, Noah, Gilbert, Kerrigan B., Takeda, Atsushi, Giampetruzzi, Annalisa, Garcia Ruiz, Mayra T., McGinn, Michaela G., Lowery, Nicholas, Martinez Baladejo, Maria T., and Carrington, James C.
Abstract:: In eukaryotes, ARGONAUTE proteins (AGOs) associate with microRNAs (miRNAs), short interfering RNAs (siRNAs), and other classes of small RNAs to regulate target RNA or target loci. Viral infection in plants induces a potent and highly specific antiviral RNA silencing response characterized by the formation of virus-derived siRNAs. Arabidopsis thaliana has...
Resource Type:: Article

Parallel analysis of RNA ends enhances global investigation of microRNAs and target RNAs of Brachypodium distachyon

Creator:: Jeong, Dong-Hoon, Schmidt, Skye A., Rymarquis, Linda A., Park, Sunhee, Ganssmann, Matthias, German, Marcelo A., Accerbi, Monica, Zhai, Jixian, Fahlgren, Noah, Fox, Samuel E., Garvin, David F., Mockler, Todd C., Carrington, James C., Meyers, Blake C., and Green, Pamela J.
Abstract:: BACKGROUND: The wild grass Brachypodium distachyon has emerged as a model system for temperate grasses and biofuel plants. However, the global analysis of miRNAs, molecules known to be key for eukaryotic gene regulation, has been limited in B. distachyon to studies examining a few samples or that rely on computational...
Resource Type:: Article

Phytophthora Have Distinct Endogenous Small RNA Populations That Include Short Interfering and microRNAs

Creator:: Fahlgren, Noah, Bollmann, Stephanie R., Kasschau, Kristin D., Cuperus, Josh T., Press, Caroline M., Sullivan, Christopher M., Chapman, Elisabeth J., Hoyer, J. Steen, Gilbert, Kerrigan B., Grunwald, Niklaus J., and Carrington, James C.
Abstract:: In eukaryotes, RNA silencing pathways utilize 20-30-nucleotide small RNAs to regulate gene expression, specify and maintain chromatin structure, and repress viruses and mobile genetic elements. RNA silencing was likely present in the common ancestor of modern eukaryotes, but most research has focused on plant and animal RNA silencing systems. Phytophthora...
Resource Type:: Article

Functional Analysis of Three Arabidopsis ARGONAUTES Using Slicer-Defective Mutants

Creator:: Carbonell, Alberto, Fahlgren, Noah, Garcia-Ruiz, Hernan, Gilbert, Kerrigan B., Montgomery, Taiowa A., Nguyen, Tammy, Cuperus, Josh T., and Carrington, James C.
Abstract:: In RNA-directed silencing pathways, ternary complexes result from small RNA-guided ARGONAUTE (AGO) associating with target transcripts. Target transcripts are often silenced through direct cleavage (slicing), destabilization through slicer-independent turnover mechanisms, and translational repression. Here, wild-type and active-site defective forms of several Arabidopsis thaliana AGO proteins involved in posttranscriptional silencing were...
Resource Type:: Article

The ERI-6/7 Helicase Acts at the First Stage of an siRNA Amplification Pathway That Targets Recent Gene Duplications

Creator:: Fischer, Sylvia E. J., Montgomery, Taiowa A., Zhang, Chi, Fahlgren, Noah, Breen, Peter C., Hwang, Alexia, Sullivan, Christopher M., Carrington, James C., and Ruvkun, Gary
Abstract:: Endogenous small interfering RNAs (siRNAs) are a class of naturally occuring regulatory RNAs found in fungi, plants, and animals. Some endogenous siRNAs are required to silence transposons or function in chromosome segregation; however, the specific roles of most endogenous siRNAs are unclear. The helicase gene eri-6/7 was identified in the...
Resource Type:: Article

ScholarsArchive@OSU

FoxSamuelBotanyPlantPathologyParallelAnalysisRNA.pdf

FoxSamuelBotanyPlantPathologyParallelAnalysisRNA_TableS1.pdf

FoxSamuelBotanyPlantPathologyParallelAnalysisRNA_FigureS1.pdf

Garcia-RuizHernanBotanyPlantPathologyRolesProgramming_SupportingInformation.zip

Garcia-RuizHernanBotanyPlantPathologyRolesProgramming.pdf

Roles and Programming of Arabidopsis ARGONAUTE Proteins during Turnip Mosaic Virus Infection

Parallel analysis of RNA ends enhances global investigation of microRNAs and target RNAs of Brachypodium distachyon

Phytophthora Have Distinct Endogenous Small RNA Populations That Include Short Interfering and microRNAs

Functional Analysis of Three Arabidopsis ARGONAUTES Using Slicer-Defective Mutants

The ERI-6/7 Helicase Acts at the First Stage of an siRNA Amplification Pathway That Targets Recent Gene Duplications

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