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Filtering by: Subject Operating systems (Computers) Creator Cull, Paul, 1943 Subject Graphical user interfaces (Computer systems)

Fast walking tree method via recurrence reduction for biological string alignment

Creator:

Oregon State University. Dept. of Computer Science, Hsu, Tai C., and Cull, Paul, 1943-

Abstract:

The meaning of biological sequences is a central problem of modern biology. Although string matching is well understood in the edit-distance model, biological strings with transpositions and inversions violate this model's assumptions. To align biologically reasonable strings, we proposed the Walking Tree Method [4,5,6,7,8], an approximate string alignment method that...

Resource Type:

Research Paper

Full Text:

Alignment Tai Hsu and Paul Cull Computer Science Department, Oregon State University Corvallis, OR 97331