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Filtering by: Creator Zhang, Heng Remove constraint Creator: Zhang, Heng Creator Dharmawardhana, Palitha Remove constraint Creator: Dharmawardhana, Palitha

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Gramene database in 2010: updates and extensions

Creator:

Youens-Clark, Ken, Buckler, Ed, Casstevens, Terry, Chen, Charles, DeClerck, Genevieve, Derwent, Paul, Dharmawardhana, Palitha, Jaiswal, Pankaj, Kersey, Paul, Karthikeyan, A. S., Lu, Jerry, McCouch, Susan R., Ren, Liya, Spooner, William, Stein, Joshua C., Thomason, Jim, Wei, Sharon, and Ware, Doreen

Abstract:

Now in its 10th year, the Gramene database (http://www.gramene.org) has grown from its primary focus on rice, the first fully-sequenced grass genome, to become a resource for major model and crop plants including Arabidopsis, Brachypodium, maize, sorghum, poplar and grape in addition to several species of rice. Gramene began with...

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Article

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., Kent,W.J., Smit,A., Zhang,Z., Baertsch,R., Hardison,R.C., Haussler,D. and Miller,W. (2003) Human-mouse
DharmawardhanaPalithaBotanyPlantPathologyGramene2013.pdf

Creator:

Monaco, Marcela K., Stein, Joshua, Naithani, Sushma, Wei, Sharon, Dharmawardhana, Palitha, Kumari, Sunita, Amarasinghe, Vindhya, Youens-Clark, Ken, Thomason, James, Preece, Justin, Pasternak, Shiran, Olson, Andrew, Jiao, Yinping, Lu, Zhenyuan, Bolser, Dan, Kerhornou, Arnaud, Staines, Dan, Walts, Brandon, Wu, Guanming, D'Eustachio, Peter, Haw, Robin, Croft, David, Kersey, Paul J., Stein, Lincoln, Jaiswal, Pankaj, and Ware, Doreen

Abstract:

Gramene (http://www.gramene.org) is a curated online resource for comparative functional genomics in crops and model plant species, currently hosting 27 fully and 10 partially sequenced reference genomes in its build number 38. Its strength derives from the application of a phylogenetic framework for genome comparison and the use of ontologies...

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Res., 40, D91–D97. 11. Vilella,A.J., Severin,J., Ureta-Vidal,A., Heng,L., Durbin,R. and Birney,E
Tello-RuizGramene2016Comparative.pdf

Creator:

Tello-Ruiz, Marcela K., Stein, Joshua, Wei, Sharon, Preece, Justin, Olson, Andrew, Naithani, Sushma, Amarasinghe, Vindhya, Dharmawardhana, Palitha, Jiao, Yinping, Mulvaney, Joseph, Kumari, Sunita, Chougule, Kapeel, Elser, Justin, Wang, Bo, Thomason, James, Bolser, Daniel M., Kerhornou, Arnaud, Walts, Brandon, Fonseca, Nuno A., Huerta, Laura, Keays, Maria, Tanga, Y. Amy, Parkinson, Helen, Fabregat, Antonio, McKay, Sheldon, Weiser, Joel, D'Eustachio, Peter, Stein, Lincoln, Petryszak, Robert, Kersey, Paul J., Jaiswal, Pankaj, and Ware, Doreen

Abstract:

Gramene (http://www.gramene.org) is an online resource for comparative functional genomics in crops and model plant species. Its two main frameworks are genomes (collaboration with Ensembl Plants) and pathways (The Plant Reactome and archival BioCyc databases). Since our last NAR update, the database website adopted a new Drupal management platform. The...

Full Text:

-Vidal,A., Heng,L., Durbin,R. and Birney,E. (2009) EnsemblCompara GeneTrees: complete, duplication-aware

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Academic Affiliation

Botany and Plant Pathology1

Creator

Dharmawardhana, Palitha[remove]3
Jaiswal, Pankaj3
Ware, Doreen3
Wei, Sharon3
Amarasinghe, Vindhya2
more Creators »

Date

20101

Decade

2010-20191

Language

English [eng]1

Peer Reviewed

Yes1

Resource Type

Article1

Rights Statement

Copyright Not Evaluated2
In Copyright1

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