Index Catalog // ScholarsArchive@OSU

Creator:: Fox, Samuel E., Geniza, Matthew, Hanumappa, Mamatha, Naithani, Sushma, Sullivan, Chris, Preece, Justin, Tiwari, Vijay K., Elser, Justin, Leonard, Jeffrey M., Sage, Abigail, Jaiswal, Pankaj, and et al.
Abstract:: BACKGROUND: Triticum monococcum (2n) is a close ancestor of T. urartu, the A-genome progenitor of cultivated hexaploid wheat, and is therefore a useful model for the study of components regulating photomorphogenesis in diploid wheat. In order to develop genetic and genomic resources for such a study, we constructed genome-wide transcriptomes...
Full Text:: :10.1093/jxb/erm225 8. Munns R, James RA, Xu B, Athman

Creator:: Baßler, Jochen, Paternoga, Helge, Holdermann, Iris, Nyarko, Afua, Clark, Sarah A., Barbar, Elisar, and et al.
Abstract:: Eukaryotic ribosome biogenesis involves ~200 assembly factors, but how these contribute to ribosome maturation is poorly understood. Here, we identify a network of factors on the nascent 60S subunit that actively remodels preribosome structure. At its hub is Rsa4, a direct substrate of the force-generating ATPase Rea1. We show that...
Full Text:: /10.1093/nar/gkt381 Lee, W., J.L. Stark, and J.L. Markley. 2014. PONDEROSA-C/S: client-server based

Creator:: Chang, Ying, Wang, Sishuo, Sekimoto, Satoshi, Spatafora, Joseph W., and et al.
Abstract:: As decomposers, fungi are key players in recycling plant material in global carbon cycles. We hypothesized that genomes of early diverging fungi may have inherited pectinases from an ancestral species that had been able to extract nutrients from pectin-containing land plants and their algal allies (Streptophytes). We aimed to infer,...
Full Text:: -1601. doi:10.1093/gbe/evv090 10.1093/gbe/evv090 Oxford University Press Version of Record http

Creator:: Ni, Junjian, Pujar, Anuradha, Youens-Clark, Ken, Jaiswal, Pankaj, and et al.
Abstract:: Gramene is a comparative information resource for plants that integrates data across diverse data domains. In this article, we describe the development of a quantitative trait loci (QTL) database and illustrate how it can be used to facilitate both the forward and reverse genetics research. The QTL database contains the...
Full Text:: applications. Database, 2009. doi:10.1093/database/bap005 10.1093/database/bap005 Oxford University Press

Creator:: Avraham, Shulamit, Tung, Chih-Wei, Ilic, Katica, Jaiswal, Pankaj, and et al.
Abstract:: The Plant Ontology Consortium (POC, http://www.plantontology.org) is a collaborative effort among model plant genome databases and plant researchers that aims to create, maintain and facilitate the use of a controlled vocabulary (ontology) for plants. The ontology allows users to ascribe attributes of plant structure (anatomy and morphology) and developmental stages...
Full Text:: vocabulary and annotations. Nucleic Acids Research, 36, D449-D454. doi:10.1093/nar/gkm908 10.1093/nar

Creator:: Prestat, Emmanuel, David, Maude M., Hultman, Jenni, Myrold, David D., and et al.
Abstract:: A new functional gene database, FOAM (Functional Ontology Assignments for Metagenomes), was developed to screen environmental metagenomic sequence datasets. FOAM provides a new functional ontology dedicated to classify gene functions relevant to environmental microorganisms based on Hidden Markov Models (HMMs). Sets of aligned protein sequences (i.e. ‘profiles’) were tailored to...
Full Text:: Research, 42(19), e145. doi:10.1093/nar/gku702 10.1093/nar/gku702 Oxford University Press Version of

Creator:: Closser, Svea, Cox, Kelly, Parris, Thomas M., Maes, Kenneth, and et al.
Abstract:: BACKGROUND: After 2 decades of focused efforts to eradicate polio, the impact of eradication activities on health systems continues to be controversial. This study evaluated the impact of polio eradication activities on routine immunization (RI) and primary healthcare (PHC). METHODS: Quantitative analysis assessed the effects of polio eradication campaigns on...
Full Text:: :10.1093/infdis/jit232 10.1093/infdis/jit232 Oxford University Press Version of Record http

Creator:: Febria, Catherine M., Hosen, Jacob D., Crump, Byron C., and et al.
Abstract:: Microbial communities are responsible for the bulk of biogeochemical processing in temporary headwater streams, yet there is still relatively little known about how community structure and function respond to periodic drying. Moreover, the ability to sample temporary habitats can be a logistical challenge due to the limited capability to measure...

Creator:: Jenner, Frances E, Hauri, Erik H., Bullock, Emma S., Goddard, Charlotte, and et al.
Abstract:: There is a lack of consensus regarding the roles of sulfide saturation versus volatile degassing on the partitioning of Cu and Ag during differentiation and eruption of convergent margin magmas. Because of their oxidized character, volatile-rich magmas from the Eastern Manus Back-arc Basin (EMBB) only reach sulfide saturation following magnetite-driven...

Creator:: Garcia-Ruiz, Hernan, Carbonell, Alberto, Hoyer, J. Steen, Fahlgren, Noah, Takeda, Atsushi, Giampetruzzi, Annalisa, Lowery, Nicholas, Carrington, James C., and et al.
Abstract:: In eukaryotes, ARGONAUTE proteins (AGOs) associate with microRNAs (miRNAs), short interfering RNAs (siRNAs), and other classes of small RNAs to regulate target RNA or target loci. Viral infection in plants induces a potent and highly specific antiviral RNA silencing response characterized by the formation of virus-derived siRNAs. Arabidopsis thaliana has...

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