Index Catalog // ScholarsArchive@OSU

Creator:: Myburg, Alexander A., Grattapaglia, Dario, Tuskan, Gerald A., Vining, Kelly, Amarasinghe, Vindhya, Ranik, Martin, Naithani, Sushma, Elser, Justin, Liston, Aaron, Spatafora, Joseph W., Dharmawardhana, Palitha, Raja, Rajani, Strauss, Steven H., Jaiswal, Pankaj, and et al.
Abstract:: Eucalypts are the world’s most widely planted hardwood trees. Their outstanding diversity, adaptability and growth have made them a global renewable resource of fibre and energy. We sequenced and assembled >94% of the 640-megabase genome of Eucalyptus grandis. Of 36,376 predicted protein-coding genes, 34% occur in tandem duplications, the largest...
Resource Type:: Article

Creator:: Myburg, Alexander A., Grattapaglia, Dario, Tuskan, Gerald A., Vining, Kelly, Amarasinghe, Vindhya, Ranik, Martin, Naithani, Sushma, Elser, Justin, Liston, Aaron, Spatafora, Joseph W., Dharmawardhana, Palitha, Raja, Rajani, Strauss, Steven H., Jaiswal, Pankaj, and et al.
Abstract:: Eucalypts are the world’s most widely planted hardwood trees. Their outstanding diversity, adaptability and growth have made them a global renewable resource of fibre and energy. We sequenced and assembled >94% of the 640-megabase genome of Eucalyptus grandis. Of 36,376 predicted protein-coding genes, 34% occur in tandem duplications, the largest...
Full Text:: , 2082-Cordley Hall, Corvallis, Oregon 97331, USA. 18Center for Genome Research and Biocomputing, Oregon

Creator:: Wang, Yi, Drader, Thomas, Tiwari, Vijay K., Leonard, Jeff, and et al.
Abstract:: Background: Mapping and map-based cloning of genes that control agriculturally and economically important traits remain great challenges for plants with complex highly repetitive genomes such as those within the grass tribe, Triticeae. Mapping limitations in the Triticeae are primarily due to low frequencies of polymorphic gene markers and poor genetic...
Full Text:: RESEARCH ARTICLE Open Access Development of a D genome specific marker resource for diploid and hexaploid

Creator:: Vukašinović, Nemanja, Cvrčková, Fatima, Eliáš, Marek, Cole, Rex A., Fowler, John E., and et al.
Abstract:: Repetitive sequences present a challenge for genome sequence assembly, and highly similar segmental duplications may disappear from assembled genome sequences. Having found a surprising lack of observable phenotypic deviations and non-Mendelian segregation in Arabidopsis thaliana mutants in SEC10, a gene encoding a core subunit of the exocyst tethering complex, we...
Full Text:: Genome Research and Biocomputing, Oregon State University, Corvallis, Oregon, United States of America

Creator:: Fox, Samuel E., Geniza, Matthew, Hanumappa, Mamatha, Naithani, Sushma, Sullivan, Chris, Preece, Justin, Tiwari, Vijay K., Elser, Justin, Leonard, Jeffrey M., Sage, Abigail, Jaiswal, Pankaj, and et al.
Abstract:: BACKGROUND: Triticum monococcum (2n) is a close ancestor of T. urartu, the A-genome progenitor of cultivated hexaploid wheat, and is therefore a useful model for the study of components regulating photomorphogenesis in diploid wheat. In order to develop genetic and genomic resources for such a study, we constructed genome-wide transcriptomes...
Full Text:: , Oregon, United States of America, 3 Center for Genome Research and Biocomputing, Oregon State University

Creator:: Thrash, J. Cameron, Temperton, Ben, Swan, Brandon K., Landry, Zachary C., Giovannoni, Stephan J., and et al.
Abstract:: Bacterioplankton of the SAR11 clade are the most abundant microorganisms in marine systems, usually representing 25% or more of the total bacterial cells in seawater worldwide. SAR11 is divided into subclades with distinct spatiotemporal distributions (ecotypes), some of which appear to be specific to deep water. Here we examine the...
Full Text:: thank Christopher M Sullivan and the Oregon State University Center for Genome Research and Biocomput

Creator:: Thrash, J. Cameron, Temperton, Ben, Swan, Brandon K., Landry, Zachary C., Giovannoni, Stephan J., and et al.
Abstract:: Bacterioplankton of the SAR11 clade are the most abundant microorganisms in marine systems, usually representing 25% or more of the total bacterial cells in seawater worldwide. SAR11 is divided into subclades with distinct spatiotemporal distributions (ecotypes), some of which appear to be specific to deep water. Here we examine the...
Full Text:: , ME 04544 4. DOE Joint Genome Institute, Walnut Creek, CA 94598 5. Departments of Civil

Creator:: Toome, Merje, Ohm, Robin A., Riley, Robert W., Boyd, Alexander, Spatafora, Joseph W., and et al.
Abstract:: Mixia osmundae (Basidiomycota, Pucciniomycotina) represents a monotypic class containing an unusual fern pathogen with incompletely understood biology. We sequenced and analyzed the genome of M. osmundae, focusing on genes that may provide some insight into its mode of pathogenicity and reproductive biology. Mixia osmundae has the smallest plant pathogenic basidiomycete...
Full Text:: . Genome Research 14: 988– 995. Brefort T, Doehlemann G, Mendoza-Mendoza A, Reissmann S, Djamei A

Creator:: Toome, Merje, Ohm, Robin A., Riley, Robert W., Boyd, Alexander, Spatafora, Joseph W., and et al.
Abstract:: Mixia osmundae (Basidiomycota, Pucciniomycotina) represents a monotypic class containing an unusual fern pathogen with incompletely understood biology. We sequenced and analyzed the genome of M. osmundae, focusing on genes that may provide some insight into its mode of pathogenicity and reproductive biology. Mixia osmundae has the smallest plant pathogenic basidiomycete...
Full Text:: Phytologist� 2013 New Phytologist Trustwww.newphytologist.com Research New Phytologist556 Results Genome

Creator:: Avila, Felipe, Das, Pranab J., Kutzler, Michelle, and et al.
Abstract:: Cytogenetic chromosome maps offer molecular tools for genome analysis and clinical cytogenetics and are of particular importance for species with difficult karyotypes, such as camelids (2n = 74). Building on the available human-camel zoo-fluorescence in situ hybridization (FISH) data, we developed the first cytogenetic map for the alpaca (Lama pacos,...
Full Text:: and Cellular Biology, Novosibirsk, Russia (Perelman); and Veterinary Research Institute, Brno, Czech

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