Background:
Mapping and map-based cloning of genes that control agriculturally and economically important traits remain great challenges for plants with complex highly repetitive genomes such as those within the grass tribe, Triticeae. Mapping limitations in the Triticeae are primarily due to low frequencies of polymorphic gene markers and poor genetic...
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wheat
Yi Wang1,2†, Thomas Drader1†, Vijay K. Tiwari3,4†, Lingli Dong1,2, Ajay Kumar5, Naxin Huo1,2
Background:
Mapping and map-based cloning of genes that control agriculturally and economically important traits remain great challenges for plants with complex highly repetitive genomes such as those within the grass tribe, Triticeae. Mapping limitations in the Triticeae are primarily due to low frequencies of polymorphic gene markers and poor genetic...
Advances in forest carbon mapping have the potential
to greatly reduce uncertainties in the global carbon
budget and to facilitate effective emissions mitigation strategies
such as REDDC (Reducing Emissions from Deforestation
and Forest Degradation). Though broad-scale mapping
is based primarily on remote sensing data, the accuracy of
resulting forest carbon...
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consequences for
remote sensing of carbon stocks
Réjou-Méchain, M., Muller-Landau, H. C., Detto, M., Thomas
The filamentous fungus Neurospora crassa responds to light in complex ways. To thoroughly
study the transcriptional response of this organism to light, RNA-seq was used to analyze capped and
polyadenylated mRNA prepared from mycelium grown for 24 hr in the dark and then exposed to light for
0 (control) 15,...
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physiological processes is the transcriptional control of gene
expression.
Neurospora perceives blue light
Repetitive sequences present a challenge for genome sequence assembly, and highly similar segmental duplications may
disappear from assembled genome sequences. Having found a surprising lack of observable phenotypic deviations and
non-Mendelian segregation in Arabidopsis thaliana mutants in SEC10, a gene encoding a core subunit of the exocyst
tethering complex, we...
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Dissecting a Hidden Gene Duplication: The Arabidopsis
The Lecanoromycetes is the largest class of lichenized Fungi, and one of the most species-rich classes in the
kingdom. Here we provide a multigene phylogenetic synthesis (using three ribosomal RNA-coding and two
protein-coding genes) of the Lecanoromycetes based on 642 newly generated and 3329 publicly available
sequences representing 1139 taxa,...
A new functional gene database, FOAM (Functional
Ontology Assignments for Metagenomes), was developed
to screen environmental metagenomic sequence
datasets. FOAM provides a new functional
ontology dedicated to classify gene functions relevant
to environmental microorganisms based on Hidden
Markov Models (HMMs). Sets of aligned protein
sequences (i.e. ‘profiles’) were tailored to...
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July 11, 2014; Accepted July 21, 2014
ABSTRACT
A new functional gene database, FOAM (Functional
Bacterioplankton of the SAR11 clade are the most abundant microorganisms in marine systems,
usually representing 25% or more of the total bacterial cells in seawater worldwide. SAR11 is divided
into subclades with distinct spatiotemporal distributions (ecotypes), some of which appear to be
specific to deep water. Here we examine the...
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number (69%) of orthologous clusters with SAR11 surface genomes, yet
were distinct at the 16S rRNA gene
Pseudomonas fluorescens WH6 secretes a germination-arrest factor (GAF) that we have
identified previously as 4-formylaminooxyvinylglycine. GAF irreversibly inhibits germination of the
seeds of numerous grassy weeds and selectively inhibits growth of the bacterial plant pathogen
Erwinia amylovora. WH6-3, a mutant that has lost the ability to produce GAF, contains a...
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, contains a Tn5
insertion in prtR, a gene that has been described previously in some strains of P
The Leguminosae has emerged as a model for studying angiosperm plastome evolution because of its striking diversity of structural rearrangements and sequence variation. However, most of what is known about legume plastomes comes from few genera representing a subset of lineages in subfamily Papilionoideae. We investigate plastome evolution in subfamily...
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.
Mimosoid plastomes have a typical angiosperm gene content and general organization as well
as a generally