Index Catalog // ScholarsArchive@OSU

Transcriptomic analysis using high-throughput sequencing and DNA microarrays

Creator:: Fox, Samuel E.
Abstract:: Transcriptomics and gene expression profiling enables the elucidation of the genetic response of an organism to various environmental cues. Transcriptomics enables the deciphering of differences between two closely related organisms to the same environment and in contrast, enables the elucidation of genetic responses of the same organism to different environmental...
Resource Type:: Dissertation
Full Text:: DISSERTATION OF Samuel E. Fox for the degree of Doctor of Philosophy in Molecular and Cellular Biology

GenizaMatthewMolecularCellularBiologyDeNovoTranscriptome.pdf

Creator:: Fox, Samuel E., Geniza, Matthew, Hanumappa, Mamatha, Naithani, Sushma, Sullivan, Chris, Preece, Justin, Tiwari, Vijay K., Elser, Justin, Leonard, Jeffrey M., Sage, Abigail, Jaiswal, Pankaj, and et al.
Abstract:: BACKGROUND: Triticum monococcum (2n) is a close ancestor of T. urartu, the A-genome progenitor of cultivated hexaploid wheat, and is therefore a useful model for the study of components regulating photomorphogenesis in diploid wheat. In order to develop genetic and genomic resources for such a study, we constructed genome-wide transcriptomes...
Full Text:: monococcum Samuel E. Fox1."¤a, Matthew Geniza1,2.", Mamatha Hanumappa1., Sushma Naithani1,3, Chris

GenizaMatthewMolecularCellularBiologyDeNovoTranscriptome_SupportingInformation.zip

Creator:: Fox, Samuel E., Geniza, Matthew, Hanumappa, Mamatha, Naithani, Sushma, Sullivan, Chris, Preece, Justin, Tiwari, Vijay K., Elser, Justin, Leonard, Jeffrey M., Sage, Abigail, Jaiswal, Pankaj, and et al.
Abstract:: BACKGROUND: Triticum monococcum (2n) is a close ancestor of T. urartu, the A-genome progenitor of cultivated hexaploid wheat, and is therefore a useful model for the study of components regulating photomorphogenesis in diploid wheat. In order to develop genetic and genomic resources for such a study, we constructed genome-wide transcriptomes...

ChristieSingleGenerationDomesticationSupplementarySoftware1.pdf

Creator:: Christie, Mark R., Marine, Melanie L., Fox, Samuel E., French, Rod A., and Blouin, Michael S.
Abstract:: The genetic underpinnings associated with the earliest stages of plant and animal domestication have remained elusive. Because a genome-wide response to selection can take many generations, the earliest detectable changes associated with domestication may first manifest as heritable changes to global patterns of gene expression. Here, to test this hypothesis,...
Full Text:: ) #============================================================================ ==========================================# dat.all <- read.csv("genecounts.csv", sep = '\t', header=TRUE, row.names=1) sam <- cbind(1:length

ChristieSingleGenerationDomestication.pdf

Creator:: Christie, Mark R., Marine, Melanie L., Fox, Samuel E., French, Rod A., and Blouin, Michael S.
Abstract:: The genetic underpinnings associated with the earliest stages of plant and animal domestication have remained elusive. Because a genome-wide response to selection can take many generations, the earliest detectable changes associated with domestication may first manifest as heritable changes to global patterns of gene expression. Here, to test this hypothesis,...
Full Text:: genes Mark R. Christie1,2,3, Melanie L. Marine3, Samuel E. Fox3,4, Rod A. French5 & Michael S. Blouin3

ChristieSingleGenerationDomesticationSupplementaryData1.pdf

Creator:: Christie, Mark R., Marine, Melanie L., Fox, Samuel E., French, Rod A., and Blouin, Michael S.
Abstract:: The genetic underpinnings associated with the earliest stages of plant and animal domestication have remained elusive. Because a genome-wide response to selection can take many generations, the earliest detectable changes associated with domestication may first manifest as heritable changes to global patterns of gene expression. Here, to test this hypothesis,...
Full Text:: 2.397E-02 130 TNNT2 Troponin T, cardiac muscle isoforms -4.511E-01 4.211E-02 131 B5X3H6 LYRIC -4.502E

ChristieSingleGenerationDomesticationSupplementaryData3.pdf

Creator:: Christie, Mark R., Marine, Melanie L., Fox, Samuel E., French, Rod A., and Blouin, Michael S.
Abstract:: The genetic underpinnings associated with the earliest stages of plant and animal domestication have remained elusive. Because a genome-wide response to selection can take many generations, the earliest detectable changes associated with domestication may first manifest as heritable changes to global patterns of gene expression. Here, to test this hypothesis,...

De Novo Transcriptome Assembly and Analyses of Gene Expression during Photomorphogenesis in Diploid Wheat Triticum monococcum

Creator:: Fox, Samuel E., Geniza, Matthew, Hanumappa, Mamatha, Naithani, Sushma, Sullivan, Chris, Preece, Justin, Tiwari, Vijay K., Elser, Justin, Leonard, Jeffrey M., Sage, Abigail, Gresham, Cathy, Kerhornou, Arnaud, Bolser, Dan, McCarthy, Fiona, Kersey, Paul, Lazo, Gerard R., and Jaiswal, Pankaj
Abstract:: Background Triticum monococcum (2n) is a close ancestor of T. urartu, the A-genome progenitor of cultivated hexaploid wheat, and is therefore a useful model for the study of components regulating photomorphogenesis in diploid wheat. In order to develop genetic and genomic resources for such a study, we constructed genome-wide transcriptomes...
Resource Type:: Article

Single_Nucleotide_Polymorphism_data.tar.gz

Creator:: Fox, Samuel E., Geniza, Matthew, Hanumappa, Mamatha, Naithani, Sushma, Sullivan, Chris, Preece, Justin, Tiwari, Vijay K., Elser, Justin, Leonard, Jeffery M., Sage, Abagail, Gresham, Cathy, Kerhornou, Arnaud, Bolser, Dan, McCarthy, Fiona, Kersey, Paul, Lazo, Gerard R., and Jaiswal, Pankaj
Abstract:: Background: Triticum monococcum (2n) is a close ancestor of T. urartu, the A-genome progenitor of cultivated hexaploid wheat, and is therefore a useful model for the study of components regulating photomorphogenesis in diploid wheat. In order to develop genetic and genomic resources for such a study, we constructed genome-wide transcriptomes...

Simple_Sequence_Repeats_data.tar.gz

Creator:: Fox, Samuel E., Geniza, Matthew, Hanumappa, Mamatha, Naithani, Sushma, Sullivan, Chris, Preece, Justin, Tiwari, Vijay K., Elser, Justin, Leonard, Jeffery M., Sage, Abagail, Gresham, Cathy, Kerhornou, Arnaud, Bolser, Dan, McCarthy, Fiona, Kersey, Paul, Lazo, Gerard R., and Jaiswal, Pankaj
Abstract:: Background: Triticum monococcum (2n) is a close ancestor of T. urartu, the A-genome progenitor of cultivated hexaploid wheat, and is therefore a useful model for the study of components regulating photomorphogenesis in diploid wheat. In order to develop genetic and genomic resources for such a study, we constructed genome-wide transcriptomes...

ScholarsArchive@OSU

Transcriptomic analysis using high-throughput sequencing and DNA microarrays

GenizaMatthewMolecularCellularBiologyDeNovoTranscriptome.pdf

GenizaMatthewMolecularCellularBiologyDeNovoTranscriptome_SupportingInformation.zip

ChristieSingleGenerationDomesticationSupplementarySoftware1.pdf

ChristieSingleGenerationDomestication.pdf

ChristieSingleGenerationDomesticationSupplementaryData1.pdf

ChristieSingleGenerationDomesticationSupplementaryData3.pdf

De Novo Transcriptome Assembly and Analyses of Gene Expression during Photomorphogenesis in Diploid Wheat Triticum monococcum

Single_Nucleotide_Polymorphism_data.tar.gz

Simple_Sequence_Repeats_data.tar.gz

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