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An ontology approach to comparative phenomics in plants

Creator:

Oellrich, Anika, Walls, Ramona L., Cannon, Ethalinda K. S., Cannon, Steven B., Cooper, Laurel, Gardiner, Jack, Gkoutos, Georgios V., Harper, Lisa, He, Mingze, Hoehndorf, Robert, Jaiswal, Pankaj, Kalberer, Scott R., Lloyd, John P., Meinke, David, Menda, Naama, Moore, Laura, Nelson, Rex T., Pujar, Anuradha, Lawrence, Carolyn J., and Huala, Eva

Abstract:

BACKGROUND: Plant phenotype datasets include many different types of data, formats, and terms from specialized vocabularies. Because these datasets were designed for different audiences, they frequently contain language and details tailored to investigators with different research objectives and backgrounds. Although phenotype comparisons across datasets have long been possible on a...

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Article

Full Text:

., Cannon, E. K. S., Cannon, S. B., Cooper, L., Gardiner, J., ... & Huala, E. (2015). An ontology approach
Maize Metabolic Network Construction and Transcriptome Analysis

Creator:

Monaco, Marcela K., Sen, Taner Z., Dharmawardhana, Palitha D., Ren, Liya, Schaeffer, Mary, Naithani, Sushma, Amarasinghe, Vindhya, Thomason, Jim, Harper, Lisa, Gardiner, Jack, Cannon, Ethalinda K.S., Lawrence, Carolyn J., Ware, Doreen, and Jaiswal, Pankaj

Abstract:

A framework for understanding the synthesis and catalysis of metabolites and other biochemicals by proteins is crucial for unraveling the physiology of cells. To create such a framework for Zea mays L. subsp. mays (maize), we developed MaizeCyc, a metabolic network of enzyme catalysts, proteins, carbohydrates, lipids, amino acids, secondary...

Resource Type:

Article

Full Text:

, Vindhya Amarasinghe, Jim Thomason, Lisa Harper, Jack Gardiner, Ethalinda K.S. Cannon, Carolyn J. Lawrence

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An ontology approach to comparative phenomics in plants

Maize Metabolic Network Construction and Transcriptome Analysis

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