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Creator:: Schaeffer, Scott, Harper, Artemus, Raja, Rajani, Jaiswal, Pankaj, and Dhingra, Amit
Abstract:: Plastids are actively involved in numerous plant processes critical to growth, development and adaptation. They play a primary role in photosynthesis, pigment and monoterpene synthesis, gravity sensing, starch and fatty acid synthesis, as well as oil, and protein storage. We applied two complementary methods to analyze the recently published apple...
Full Text:: of Sequenced Higher Plant Genomes Schaeffer, S., Harper, A., Raja, R., Jaiswal, P., Dhingra, A

Creator:: Schaeffer, Scott, Harper, Artemus, Raja, Rajani, Jaiswal, Pankaj, and Dhingra, Amit
Abstract:: Plastids are actively involved in numerous plant processes critical to growth, development and adaptation. They play a primary role in photosynthesis, pigment and monoterpene synthesis, gravity sensing, starch and fatty acid synthesis, as well as oil, and protein storage. We applied two complementary methods to analyze the recently published apple...

Creator:: Schaeffer, Scott, Harper, Artemus, Raja, Rajani, Jaiswal, Pankaj, and Dhingra, Amit
Abstract:: Plastids are actively involved in numerous plant processes critical to growth, development and adaptation. They play a primary role in photosynthesis, pigment and monoterpene synthesis, gravity sensing, starch and fatty acid synthesis, as well as oil, and protein storage. We applied two complementary methods to analyze the recently published apple...
Resource Type:: Article

Creator:: Naithani, Sushma, Partipilo, Christina M., Raja, Rajani, Elser, Justin L., and Jaiswal, Pankaj
Abstract:: FragariaCyc is a strawberry-specific cellular metabolic network based on the annotated genome sequence of Fragaria vesca L. ssp. vesca, accession Hawaii 4. It was built on the Pathway-Tools platform using MetaCyc as the reference. The experimental evidences from published literature were used for supporting/editing existing entities and for the addition...
Full Text:: . Partipilo, Rajani Raja, Justin L. Elser and Pankaj Jaiswal Department of Botany and Plant Pathology, Oregon

Creator:: Naithani, Sushma, Partipilo, Christina M., Raja, Rajani, Elser, Justin L., and Jaiswal, Pankaj
Abstract:: FragariaCyc is a strawberry-specific cellular metabolic network based on the annotated genome sequence of Fragaria vesca L. ssp. vesca, accession Hawaii 4. It was built on the Pathway-Tools platform using MetaCyc as the reference. The experimental evidences from published literature were used for supporting/editing existing entities and for the addition...

Creator:: Naithani, Sushma, Partipilo, Christina M., Raja, Rajani, Elser, Justin L., and Jaiswal, Pankaj
Abstract:: FragariaCyc is a strawberry-specific cellular metabolic network based on the annotated genome sequence of Fragaria vesca L. ssp. vesca, accession Hawaii 4. It was built on the Pathway-Tools platform using MetaCyc as the reference. The experimental evidences from published literature were used for supporting/editing existing entities and for the addition...

Creator:: Naithani, Sushma, Partipilo, Christina M., Raja, Rajani, Elser, Justin L., and Jaiswal, Pankaj
Abstract:: FragariaCyc is a strawberry-specific cellular metabolic network based on the annotated genome sequence of Fragaria vesca L. ssp. vesca, accession Hawaii 4. It was built on the Pathway-Tools platform using MetaCyc as the reference. The experimental evidences from published literature were used for supporting/editing existing entities and for the addition...
Resource Type:: Article

Creator:: Naithani, Sushma, Raja, Rajani, Waddell, Elijah N., Elser, Justin, Gouthu, Satyanarayana, Deluc, Laurent G., and Jaiswal, Pankaj
Abstract:: We have developed VitisCyc, a grapevine-specific metabolic pathway database that allows researchers to (i) search and browse the database for its various components such as metabolic pathways, reactions, compounds, genes and proteins, (ii) compare grapevine metabolic networks with other publicly available plant metabolic networks, and (iii) upload, visualize and analyze...
Resource Type:: Article
Full Text:: Rajani Raja constructed the VitisCyc, Sushma Naithani supervised overall curation pro- cess and Sushma

Creator:: Bushley, Kathryn E., Raja, Rajani, Jaiswal, Pankaj, Cumbie, Jason S., Nonogaki, Mariko, Boyd, Alexander E., Owensby, C. Alisha, Knaus, Brian J., Elser, Justin, Miller, Daniel, Di, Yanming, McPhail, Kerry L., and Spatafora, Joseph W.
Abstract:: The ascomycete fungus Tolypocladium inflatum, a pathogen of beetle larvae, is best known as the producer of the immunosuppressant drug cyclosporin. The draft genome of T. inflatum strain NRRL 8044 (ATCC 34921), the isolate from which cyclosporin was first isolated, is presented along with comparative analyses of the biosynthesis of...
Resource Type:: Article
Full Text:: *, Rajani Raja1, Pankaj Jaiswal1, Jason S. Cumbie1, Mariko Nonogaki2, Alexander E. Boyd3, C. Alisha

Creator:: Myburg, Alexander A., Grattapaglia, Dario, Tuskan, Gerald A., Vining, Kelly, Amarasinghe, Vindhya, Ranik, Martin, Naithani, Sushma, Elser, Justin, Liston, Aaron, Spatafora, Joseph W., Dharmawardhana, Palitha, Raja, Rajani, Strauss, Steven H., Jaiswal, Pankaj, and et al.
Abstract:: Eucalypts are the world’s most widely planted hardwood trees. Their outstanding diversity, adaptability and growth have made them a global renewable resource of fibre and energy. We sequenced and assembled >94% of the 640-megabase genome of Eucalyptus grandis. Of 36,376 predicted protein-coding genes, 34% occur in tandem duplications, the largest...
Full Text:: . Boyd18, Aaron Liston17,18, Joseph W. Spatafora17,18, Palitha Dharmwardhana17, Rajani Raja17, Christopher

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