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Filtering by: Creator Huynh, Cuong Van Creator Kimbrel, Jeffrey A.

Higher order asymptotics for negative binomial regression inferences from RNA-sequencing data

Creator:

Di, Yanming, Emerson, Sarah C., Schafer, Daniel W., Kimbrel, Jeffrey A., and Chang, Jeff H.

Abstract:

RNA sequencing (RNA-Seq) is the current method of choice for characterizing transcriptomes and quantifying gene expression changes. This next generation sequencing-based method provides unprecedented depth and resolution. The negative binomial (NB) probability distribution has been shown to be a useful model for frequencies of mapped RNA-Seq reads and consequently provides...

Resource Type:

Article
Genome-enabled discovery and characterization of type III effector-encoding genes of plant symbiotic bacteria

Creator:

Kimbrel, Jeffrey A.

Abstract:

Symbiosis is the close and protracted interaction between organisms. The molecular interactions that occur during symbiosis are complex with multiple barriers that must be overcome. Many Gram-negative, host-associated bacteria use a type III secretion system to mediate associations with their eukaryotic hosts. This secretion system is a specialized apparatus for...

Resource Type:

Dissertation

Full Text:

called avirulence (Avr) proteins (Flor, 1971; van der Biezen and Jones, 1998). Avr recognition is