Index Catalog // ScholarsArchive@OSU

Unproductive alternative splicing and nonsense mRNAs: A widespread phenomenon among plant circadian clock genes

Creator:: Filichkin, Sergei A. and Mockler, Todd C.
Abstract:: Background: Recent mapping of eukaryotic transcriptomes and spliceomes using massively parallel RNA sequencing (RNA-seq) has revealed that the extent of alternative splicing has been considerably underestimated. Evidence also suggests that many pre-mRNAs undergo unproductive alternative splicing resulting in incorporation of in-frame premature termination codons (PTCs). The destinies and potential functions...
Resource Type:: Article
Full Text:: splicing and nonsense mRNAs: A widespread phenomenon among plant circadian clock genes Sergei A Filichkin1

Rapid Synthesis of a Long Double-Stranded Oligonucleotide from a Single-Stranded Nucleotide Using Magnetic Beads and an Oligo Library

Creator:: Pengpumkiat, Sumate, Koesdjojo, Myra, Rowley, Erik R., Mockler, Todd C., and Remcho, Vincent T.
Abstract:: Chemical synthesis of oligonucleotides is a widely used tool in the field of biochemistry. Several methods for gene synthesis have been introduced in the growing area of genomics. In this paper, a novel method of constructing dsDNA is proposed. Short (28-mer) oligo fragments from a library were assembled through successive...
Resource Type:: Article

JaiswalPankajBotanyPlantPathologyGlobalProfilingRice.pdf

Creator:: Filichkin, Sergei A., Breton, Ghislain, Priest, Henry D., Dharmawardhana, Palitha, Jaiswal, Pankaj, Fox, Samuel E., Michael, Todd P., Chory, Joanne, Kay, Steve A., and Mockler, Todd C.
Abstract:: BACKGROUND: Circadian clocks provide an adaptive advantage through anticipation of daily and seasonal environmental changes. In plants, the central clock oscillator is regulated by several interlocking feedback loops. It was shown that a substantial proportion of the Arabidopsis genome cycles with phases of peak expression covering the entire day. Synchronized...
Full Text:: Dharmawardhana1, Pankaj Jaiswal1, Samuel E. Fox1, Todd P. Michael3¤b, Joanne Chory4, Steve A. Kay2, Todd C

JaiswalPankajBotanyPlantPathologyGlobalProfilingRice_SupportingInformation.zip

Creator:: Filichkin, Sergei A., Breton, Ghislain, Priest, Henry D., Dharmawardhana, Palitha, Jaiswal, Pankaj, Fox, Samuel E., Michael, Todd P., Chory, Joanne, Kay, Steve A., and Mockler, Todd C.
Abstract:: BACKGROUND: Circadian clocks provide an adaptive advantage through anticipation of daily and seasonal environmental changes. In plants, the central clock oscillator is regulated by several interlocking feedback loops. It was shown that a substantial proportion of the Arabidopsis genome cycles with phases of peak expression covering the entire day. Synchronized...

Global Profiling of Rice and Poplar Transcriptomes Highlights Key Conserved Circadian-Controlled Pathways and cis-Regulatory Modules

Creator:: Filichkin, Sergei A., Breton, Ghislain, Priest, Henry D., Dharmawardhana, Palitha, Jaiswal, Pankaj, Fox, Samuel E., Michael, Todd P., Chory, Joanne, Kay, Steve A., and Mockler, Todd C.
Abstract:: BACKGROUND: Circadian clocks provide an adaptive advantage through anticipation of daily and seasonal environmental changes. In plants, the central clock oscillator is regulated by several interlocking feedback loops. It was shown that a substantial proportion of the Arabidopsis genome cycles with phases of peak expression covering the entire day. Synchronized...
Resource Type:: Article

FoxSamuelBotanyPlantPathologyAnalysisGlobalGene.pdf

Creator:: Priest, Henry D., Fox, Samuel E., Rowley, Erik R., Murray, Jessica R., Michael, Todd P., and Mockler, Todd C.
Abstract:: Brachypodium distachyon is a close relative of many important cereal crops. Abiotic stress tolerance has a significant impact on productivity of agriculturally important food and feedstock crops. Analysis of the transcriptome of Brachypodium after chilling, high-salinity, drought, and heat stresses revealed diverse differential expression of many transcripts. Weighted Gene Co-Expression...
Full Text:: , Todd P. Michael4¤a, Todd C. Mockler1,2,3* 1 Donald Danforth Plant Science Center, Saint Louis

FoxSamuelBotanyPlantPathologyAnalysisGlobalGene_SupportingInformation.zip

Creator:: Priest, Henry D., Fox, Samuel E., Rowley, Erik R., Murray, Jessica R., Michael, Todd P., and Mockler, Todd C.
Abstract:: Brachypodium distachyon is a close relative of many important cereal crops. Abiotic stress tolerance has a significant impact on productivity of agriculturally important food and feedstock crops. Analysis of the transcriptome of Brachypodium after chilling, high-salinity, drought, and heat stresses revealed diverse differential expression of many transcripts. Weighted Gene Co-Expression...

Analysis of Global Gene Expression in Brachypodium distachyon Reveals Extensive Network Plasticity in Response to Abiotic Stress

Creator:: Priest, Henry D., Fox, Samuel E., Rowley, Erik R., Murray, Jessica R., Michael, Todd P., and Mockler, Todd C.
Abstract:: Brachypodium distachyon is a close relative of many important cereal crops. Abiotic stress tolerance has a significant impact on productivity of agriculturally important food and feedstock crops. Analysis of the transcriptome of Brachypodium after chilling, high-salinity, drought, and heat stresses revealed diverse differential expression of many transcripts. Weighted Gene Co-Expression...
Resource Type:: Article

Host-Selective Toxins of Pyrenophora tritici-repentis Induce Common Responses Associated with Host Susceptibility

Creator:: Pandelova, Iovanna, Figueroa, Melania, Wilhelm, Larry J., Manning, Viola A., Mankaney, Aakash N., Mockler, Todd C., and Ciuffetti, Lynda M.
Abstract:: Pyrenophora tritici-repentis (Ptr), a necrotrophic fungus and the causal agent of tan spot of wheat, produces one or a combination of host-selective toxins (HSTs) necessary for disease development. The two most studied toxins produced by Ptr, Ptr ToxA (ToxA) and Ptr ToxB (ToxB), are proteins that cause necrotic or chlorotic...
Resource Type:: Article
Full Text:: Figueroa1,2, Larry J. Wilhelm1, Viola A. Manning1, Aakash N. Mankaney1, Todd C. Mockler1,3, Lynda M

Host-Selective Toxins of Pyrenophora tritici-repentis Induce Common Responses Associated with Host Susceptibility

Creator:: Pandelova, Iovanna, Figueroa, Melania, Wilhelm, Larry J., Manning, Viola A., Mankaney, Aakash N., Mockler, Todd C., and Ciuffetti, Lynda M.
Abstract:: Pyrenophora tritici-repentis (Ptr), a necrotrophic fungus and the causal agent of tan spot of wheat, produces one or a combination of host-selective toxins (HSTs) necessary for disease development. The two most studied toxins produced by Ptr, Ptr ToxA (ToxA) and Ptr ToxB (ToxB), are proteins that cause necrotic or chlorotic...
Resource Type:: Article
Full Text:: Figueroa1,2, Larry J. Wilhelm1, Viola A. Manning1, Aakash N. Mankaney1, Todd C. Mockler1,3, Lynda M

ScholarsArchive@OSU

Unproductive alternative splicing and nonsense mRNAs: A widespread phenomenon among plant circadian clock genes

Rapid Synthesis of a Long Double-Stranded Oligonucleotide from a Single-Stranded Nucleotide Using Magnetic Beads and an Oligo Library

JaiswalPankajBotanyPlantPathologyGlobalProfilingRice.pdf

JaiswalPankajBotanyPlantPathologyGlobalProfilingRice_SupportingInformation.zip

Global Profiling of Rice and Poplar Transcriptomes Highlights Key Conserved Circadian-Controlled Pathways and cis-Regulatory Modules

FoxSamuelBotanyPlantPathologyAnalysisGlobalGene.pdf

FoxSamuelBotanyPlantPathologyAnalysisGlobalGene_SupportingInformation.zip

Analysis of Global Gene Expression in Brachypodium distachyon Reveals Extensive Network Plasticity in Response to Abiotic Stress

Host-Selective Toxins of Pyrenophora tritici-repentis Induce Common Responses Associated with Host Susceptibility

Host-Selective Toxins of Pyrenophora tritici-repentis Induce Common Responses Associated with Host Susceptibility

Limit your search

Academic Affiliation

Creator

Date

Decade

Language

License

Non-Academic Affiliation

Peer Reviewed

Resource Type

Rights Statement

Search Constraints

Search Results

Limit your search