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Filtering by: Creator Zhang, Heng Remove constraint Creator: Zhang, Heng Creator Naithani, Sushma Remove constraint Creator: Naithani, Sushma

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Maize Metabolic Network Construction and Transcriptome Analysis

Creator:

Monaco, Marcela K., Sen, Taner Z., Dharmawardhana, Palitha D., Ren, Liya, Schaeffer, Mary, Naithani, Sushma, Amarasinghe, Vindhya, Thomason, Jim, Harper, Lisa, Gardiner, Jack, Cannon, Ethalinda K.S., Lawrence, Carolyn J., Ware, Doreen, and Jaiswal, Pankaj

Abstract:

A framework for understanding the synthesis and catalysis of metabolites and other biochemicals by proteins is crucial for unraveling the physiology of cells. To create such a framework for Zea mays L. subsp. mays (maize), we developed MaizeCyc, a metabolic network of enzyme catalysts, proteins, carbohydrates, lipids, amino acids, secondary...

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Article

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, 2009; Latendresse et al., 2011). Th ese include the Plant Metabolic Network (Plant- Cyc) (Zhang et al
DharmawardhanaPalithaBotanyPlantPathologyGramene2013.pdf

Creator:

Monaco, Marcela K., Stein, Joshua, Naithani, Sushma, Wei, Sharon, Dharmawardhana, Palitha, Kumari, Sunita, Amarasinghe, Vindhya, Youens-Clark, Ken, Thomason, James, Preece, Justin, Pasternak, Shiran, Olson, Andrew, Jiao, Yinping, Lu, Zhenyuan, Bolser, Dan, Kerhornou, Arnaud, Staines, Dan, Walts, Brandon, Wu, Guanming, D'Eustachio, Peter, Haw, Robin, Croft, David, Kersey, Paul J., Stein, Lincoln, Jaiswal, Pankaj, and Ware, Doreen

Abstract:

Gramene (http://www.gramene.org) is a curated online resource for comparative functional genomics in crops and model plant species, currently hosting 27 fully and 10 partially sequenced reference genomes in its build number 38. Its strength derives from the application of a phylogenetic framework for genome comparison and the use of ontologies...

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Res., 40, D91–D97. 11. Vilella,A.J., Severin,J., Ureta-Vidal,A., Heng,L., Durbin,R. and Birney,E
Tello-RuizGramene2016Comparative.pdf

Creator:

Tello-Ruiz, Marcela K., Stein, Joshua, Wei, Sharon, Preece, Justin, Olson, Andrew, Naithani, Sushma, Amarasinghe, Vindhya, Dharmawardhana, Palitha, Jiao, Yinping, Mulvaney, Joseph, Kumari, Sunita, Chougule, Kapeel, Elser, Justin, Wang, Bo, Thomason, James, Bolser, Daniel M., Kerhornou, Arnaud, Walts, Brandon, Fonseca, Nuno A., Huerta, Laura, Keays, Maria, Tanga, Y. Amy, Parkinson, Helen, Fabregat, Antonio, McKay, Sheldon, Weiser, Joel, D'Eustachio, Peter, Stein, Lincoln, Petryszak, Robert, Kersey, Paul J., Jaiswal, Pankaj, and Ware, Doreen

Abstract:

Gramene (http://www.gramene.org) is an online resource for comparative functional genomics in crops and model plant species. Its two main frameworks are genomes (collaboration with Ensembl Plants) and pathways (The Plant Reactome and archival BioCyc databases). Since our last NAR update, the database website adopted a new Drupal management platform. The...

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-Vidal,A., Heng,L., Durbin,R. and Birney,E. (2009) EnsemblCompara GeneTrees: complete, duplication-aware

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Academic Affiliation

Botany and Plant Pathology1

Creator

Amarasinghe, Vindhya3
Jaiswal, Pankaj3
Naithani, Sushma[remove]3
Ware, Doreen3
d'eustachio, Peter2
more Creators »

Date

20131

Decade

2010-20191

Language

English [eng]1

Peer Reviewed

Yes1

Resource Type

Article1

Rights Statement

Copyright Not Evaluated3

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