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BoydAlexanderBotanyPlantPathologyGenomeSequencingProvides_TablesS1-S11.xls

Creator:: Toome, Merje, Ohm, Robin A., Riley, Robert W., Boyd, Alexander, Spatafora, Joseph W., and et al.
Abstract:: Mixia osmundae (Basidiomycota, Pucciniomycotina) represents a monotypic class containing an unusual fern pathogen with incompletely understood biology. We sequenced and analyzed the genome of M. osmundae, focusing on genes that may provide some insight into its mode of pathogenicity and reproductive biology. Mixia osmundae has the smallest plant pathogenic basidiomycete...
Full Text:: al. 2011 Table S2 Table S2 List of confirmed avirulence genes in different plant pathogens (with a

BoydAlexanderBotanyPlantPathologyGenomeSequencingProvides_SupportingInformation.pdf

Creator:: Toome, Merje, Ohm, Robin A., Riley, Robert W., Boyd, Alexander, Spatafora, Joseph W., and et al.
Abstract:: Mixia osmundae (Basidiomycota, Pucciniomycotina) represents a monotypic class containing an unusual fern pathogen with incompletely understood biology. We sequenced and analyzed the genome of M. osmundae, focusing on genes that may provide some insight into its mode of pathogenicity and reproductive biology. Mixia osmundae has the smallest plant pathogenic basidiomycete...
Full Text:: beads followed by end-repair, phosphorylation and A-tailing. Fragments were ligated with HiSeq

BoydAlexanderBotanyPlantPathologyGenomeSequencingProvides.pdf

Creator:: Toome, Merje, Ohm, Robin A., Riley, Robert W., Boyd, Alexander, Spatafora, Joseph W., and et al.
Abstract:: Mixia osmundae (Basidiomycota, Pucciniomycotina) represents a monotypic class containing an unusual fern pathogen with incompletely understood biology. We sequenced and analyzed the genome of M. osmundae, focusing on genes that may provide some insight into its mode of pathogenicity and reproductive biology. Mixia osmundae has the smallest plant pathogenic basidiomycete...
Full Text:: Toome, M., Ohm, R. A., Riley, R. W., James, T. Y., Lazarus, K. L., Henrissat, B., Albu, S., Boyd, A

SpataforaJosephBotanyPlantPathologyLatentHomologyConvergent_SupplementaryMaterials.pdf

Creator:: Nagy, Laszlo G., Ohm, Robin A., Kovács, Gabor M., Spatafora, Joseph W., and et al.
Abstract:: Convergent evolution is common throughout the tree of life, but the molecular mechanisms causing similar phenotypes to appear repeatedly are obscure. Yeasts have arisen in multiple fungal clades, but the genetic causes and consequences of their evolutionary origins are unknown. Here we show that the potential to develop yeast forms...
Full Text:: only proteins that are members of a gene family with more than one member. Note that 3383 orthogroups

SpataforaJosephBotanyPlantPathologyLatentHomologyConvergent_SupplementaryData.xlsx

Creator:: Nagy, Laszlo G., Ohm, Robin A., Kovács, Gabor M., Spatafora, Joseph W., and et al.
Abstract:: Convergent evolution is common throughout the tree of life, but the molecular mechanisms causing similar phenotypes to appear repeatedly are obscure. Yeasts have arisen in multiple fungal clades, but the genetic causes and consequences of their evolutionary origins are unknown. Here we show that the potential to develop yeast forms...
Full Text:: to gene families with > 1 proteins. Orthogroups containing a single protein and not showing

SpataforaJosephBotanyPlantPathologyLatentHomologyConvergent.pdf

Creator:: Nagy, Laszlo G., Ohm, Robin A., Kovács, Gabor M., Spatafora, Joseph W., and et al.
Abstract:: Convergent evolution is common throughout the tree of life, but the molecular mechanisms causing similar phenotypes to appear repeatedly are obscure. Yeasts have arisen in multiple fungal clades, but the genetic causes and consequences of their evolutionary origins are unknown. Here we show that the potential to develop yeast forms...
Full Text:: the repeated emergence of yeasts Nagy, L. G., Ohm, R. A., Kovács, G. M., Floudas, D., Riley, R

Phylogenomic Analyses Indicate that Early Fungi Evolved Digesting Cell Walls of Algal Ancestors of Land Plants

Creator:: Chang, Ying, Wang, Sishuo, Sekimoto, Satoshi, Aerts, Andrea L., Choi, Cindy, Clum, Alicia, LaButti, Kurt M., Lindquist, Erika A., Ngan, Chew Yee, Ohm, Robin A., Salamov, Asaf A., Grigoriev, Igor V., Spatafora, Joseph W., and Berbee, Mary L.
Abstract:: As decomposers, fungi are key players in recycling plant material in global carbon cycles. We hypothesized that genomes of early diverging fungi may have inherited pectinases from an ancestral species that had been able to extract nutrients from pectin-containing land plants and their algal allies (Streptophytes). We aimed to infer,...
Resource Type:: Article

Diverse Lifestyles and Strategies of Plant Pathogenesis Encoded in the Genomes of Eighteen Dothideomycetes Fungi

Creator:: Ohm, Robin A., Feau, Nicolas, Henrissat, Bernard, Schoch, Conrad L., Horwitz, Benjamin A., Barry, Kerrie W., Condon, Bradford J., Copeland, Alex C., Dhillon, Braham, Glaser, Fabian, Hesse, Cedar N., Kosti, Idit, LaButti, Kurt, Lindquist, Erika A., Lucas, Susan, Salamov, Asaf A., Bradshaw, Rosie E., Ciuffetti, Lynda, Hamelin, Richard C., Kema, Gert H. J., Lawrence, Christopher, Scott, James A., Spatafora, Joseph W., Turgeon, B. Gillian, de Wit, Pierre J. G. M., Zhong, Shaobin, Goodwin, Stephen B., and Grigoriev, Igor V.
Abstract:: Correction 5 Mar 2013: Ohm RA, Feau N, Henrissat B, Schoch CL, Horwitz BA, et al. (2013) Correction: Diverse Lifestyles and Strategies of Plant Pathogenesis Encoded in the Genomes of Eighteen Dothideomycetes Fungi. PLOS Pathogens 9(3): 10.1371/annotation/fcca88ac-d684-46e0-a483-62af67e777bd
Resource Type:: Article
Full Text:: , Gert H. J. Kema11, Christopher Lawrence12, James A. Scott13, Joseph W. Spatafora8, B. Gillian Turgeon6

Genome sequencing provides insight into the reproductive biology, nutritional mode and ploidy of the fern pathogen Mixia osmundae

Creator:: Toome, Merje, Ohm, Robin A., Riley, Robert W., James, Timothy Y., Lazarus, Katherine L., Henrissat, Bernard, Albu, Sebastian, Boyd, Alexander, Chow, Julianna, Clum, Alicia, Heller, Gregory, Lipzen, Anna, Nolan, Matt, Sandor, Laura, Zvenigorodsky, Natasha, Grigoriev, Igor V., Spatafora, Joseph W., and Aime, M. Catherine
Abstract:: Mixia osmundae (Basidiomycota, Pucciniomycotina) represents a monotypic class containing an unusual fern pathogen with incompletely understood biology. We sequenced and analyzed the genome of M. osmundae, focusing on genes that may provide some insight into its mode of pathogenicity and reproductive biology. Mixia osmundae has the smallest plant pathogenic basidiomycete...
Resource Type:: Article

Latent homology and convergent regulatory evolution underlies the repeated emergence of yeasts

Creator:: Nagy, László G., Ohm, Robin A., Kovács, Gábor M., Floudas, Dimitrios, Riley, Robert, Gácser, Attila, Sipiczki, Mátyás, Davis, John M., Doty, Sharon L., de Hoog, G Sybren, Lang, B. Franz, Spatafora, Joseph W., Martin, Francis M., Grigoriev, Igor V., and Hibbett, David S.
Abstract:: Convergent evolution is common throughout the tree of life, but the molecular mechanisms causing similar phenotypes to appear repeatedly are obscure. Yeasts have arisen in multiple fungal clades, but the genetic causes and consequences of their evolutionary origins are unknown. Here we show that the potential to develop yeast forms...
Resource Type:: Article

ScholarsArchive@OSU

BoydAlexanderBotanyPlantPathologyGenomeSequencingProvides_TablesS1-S11.xls

BoydAlexanderBotanyPlantPathologyGenomeSequencingProvides_SupportingInformation.pdf

BoydAlexanderBotanyPlantPathologyGenomeSequencingProvides.pdf

SpataforaJosephBotanyPlantPathologyLatentHomologyConvergent_SupplementaryMaterials.pdf

SpataforaJosephBotanyPlantPathologyLatentHomologyConvergent_SupplementaryData.xlsx

SpataforaJosephBotanyPlantPathologyLatentHomologyConvergent.pdf

Phylogenomic Analyses Indicate that Early Fungi Evolved Digesting Cell Walls of Algal Ancestors of Land Plants

Diverse Lifestyles and Strategies of Plant Pathogenesis Encoded in the Genomes of Eighteen Dothideomycetes Fungi

Genome sequencing provides insight into the reproductive biology, nutritional mode and ploidy of the fern pathogen Mixia osmundae

Latent homology and convergent regulatory evolution underlies the repeated emergence of yeasts

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