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Metagenome sequence of Elaphomyces granulatus from sporocarp tissue reveals Ascomycota ectomycorrhizal fingerprints of genome expansion and a Proteobacteria-rich microbiome

Creator:: Quandt, C. Alisha, Kohler, Annegret, Hesse, Cedar N., Sharpton, Thomas J., Martin, Francis, and Spatafora, Joseph W.
Abstract:: Many obligate symbiotic fungi are difficult to maintain in culture, and there is a growing need for alternative approaches to obtaining tissue and subsequent genomic assemblies from such species. In this study, the genome of Elaphomyces granulatus was sequenced from sporocarp tissue. The genome assembly remains on many contigs, but...
Resource Type:: Article
Full Text:: sporocarp tissue reveals Ascomycota ectomycorrhizal fingerprints of genome expansion and a

Phylogenetic placement of the ectomycorrhizal genus Cenococcum in Gloniaceae (Dothideomycetes)

Creator:: Spatafora, Joseph W., Owensby, C. Alisha, Douhan, Greg W., Boehm, Eric W. A., and Schoch, Conrad L.
Abstract:: Cenococcum is a genus of ectomycorrhizal Ascomycota that has a broad host range and geographic distribution. It is not known to produce either meiotic or mitotic spores and is known to exist only in the form of hyphae, sclerotia and host-colonized ectomycorrhizal root tips. Due to its lack of sexual...
Resource Type:: Article
Full Text:: : Cenococcum is a genus of ectomycorrhizal Ascomycota that has a broad host range and geograph- ic distribution

BoydAlexanderBotanyPlantPathologyGenomeSequencingProvides_SupportingInformation.pdf

Creator:: Toome, Merje, Ohm, Robin A., Riley, Robert W., Boyd, Alexander, Spatafora, Joseph W., and et al.
Abstract:: Mixia osmundae (Basidiomycota, Pucciniomycotina) represents a monotypic class containing an unusual fern pathogen with incompletely understood biology. We sequenced and analyzed the genome of M. osmundae, focusing on genes that may provide some insight into its mode of pathogenicity and reproductive biology. Mixia osmundae has the smallest plant pathogenic basidiomycete...
Full Text:: beads followed by end-repair, phosphorylation and A-tailing. Fragments were ligated with HiSeq

BoydAlexanderBotanyPlantPathologyGenomeSequencingProvides.pdf

Creator:: Toome, Merje, Ohm, Robin A., Riley, Robert W., Boyd, Alexander, Spatafora, Joseph W., and et al.
Abstract:: Mixia osmundae (Basidiomycota, Pucciniomycotina) represents a monotypic class containing an unusual fern pathogen with incompletely understood biology. We sequenced and analyzed the genome of M. osmundae, focusing on genes that may provide some insight into its mode of pathogenicity and reproductive biology. Mixia osmundae has the smallest plant pathogenic basidiomycete...
Full Text:: using MUSCLE (Edgar, 2004) and poorly aligned regions were removed with GBlocks (Castresana, 2000). A

Comparative Genomics of a Plant-Pathogenic Fungus, Pyrenophora tritici-repentis, Reveals Transduplication and the Impact of Repeat Elements on Pathogenicity and Population Divergence

Creator:: Manning, Viola A., Pandelova, Iovanna, Dhillon, Braham, Wilhelm, Larry J., Goodwin, Stephen B., Berlin, Aaron M., Figueroa, Melania, Freitag, Michael, Hane, James K., Henrissat, Bernard, Holman, Wade H., Kodira, Chinnappa D., Martin, Joel, Oliver, Richard P., Robbertse, Barbara, Schackwitz, Wendy, Schwartz, David C., Spatafora, Joseph W., Turgeon, B. Gillian, Yandava, Chandri, Young, Sarah, Zhou, Shiguo, Zeng, Qiandong, Grigoriev, Igor V., Ma, Li-Jun, and Ciuffetti, Lynda M.
Abstract:: Pyrenophora tritici-repentis is a necrotrophic fungus causal to the disease tan spot of wheat, whose contribution to crop loss has increased significantly during the last few decades. Pathogenicity by this fungus is attributed to the production of host-selective toxins ( HST), which are recognized by their host in a genotype-specific...
Resource Type:: Article
Full Text:: GGG004044 41..63 INVESTIGATION Comparative Genomics of a Plant

SpataforaJosephBotanyPlantPathologyPaleozoicOriginEnzymaticSupplementaryMaterials.pdf

Creator:: Floudas, Dimitrios, Binder, Manfred, Riley, Robert, Barry, Kerrie, Blanchette, Robert A., Henrissat, Bernard, Martínez, Angel T., Otillar, Robert, Spatafora, Joseph W., Yadav, Jagjit S., Aerts, Andrea, Benoit, Isabelle, Boyd, Alex, Carlson, Alexis, Copeland, Alex, Coutinho, Pedro M., de Vries, Ronald P., Ferreira, Patricia, Findley, Keisha, Foster, Brian, Gaskell, Jill, Glotzer, Dylan, Gorecki, Pawel, Heitman, Joseph, Hesse, Cedar, Hori, Chiaki, Igarashi, Kiyohiko, Jurgens, Joel A., Kallen, Nathan, Kersten, Phil, Kohler, Annegret, Kues, Ursula, Kumar, T. K. Arun, Kuo, Alan, LaButti, Kurt, Larrondo, Luis F., Lindquist, Erika, Ling, Albee, Lombard, Vincent, Lucas, Susan, Lundell, Taina, Martin, Rachael, McLaughlin, David J., Morgenstern, Ingo, Morin, Emanuelle, Murat, Claude, Nagy, Laszlo G., Nolan, Matt, Ohm, Robin A., Patyshakuliyeva, Aleksandrina, Rokas, Antonis, Ruiz-Duenas, Francisco J., Sabat, Grzegorz, Salamov, Asaf, Samejima, Masahiro, Schmutz, Jeremy, Slot, Jason C., St. John, Franz, Stenlid, Jan, Sun, Hui, Sun, Sheng, Syed, Khajamohiddin, Tsang, Adrian, Wiebenga, Ad, Young, Darcy, Pisabarro, Antonio, Eastwood, Daniel C., Martin, Francis, Cullen, Dan, Grigoriev, Igor V., and Hibbett, David S.
Abstract:: Wood is a major pool of organic carbon that is highly resistant to decay, owing largely to the presence of lignin. The only organisms capable of substantial lignin decay are white rot fungi in the Agaricomycetes, which also contains non–lignin-degrading brown rot and ectomycorrhizal species. Comparative analyses of 31 fungal...
Full Text:: , Robert Riley, Kerrie Barry, Robert A. Blanchette, Bernard Henrissat, Angel T. Martínez, Robert Otillar

New species and new combinations in the genus Paraisaria (Hypocreales, Ophiocordycipitaceae) from the U.S.A., supported by polyphasic analysis

Creator:: Tehan, Richard M., Dooley, Connor B., Barge, Edward G., McPhail, Kerry L., and Spatafora, Joseph W.
Abstract:: Molecular phylogenetic and chemical analyses, and morphological characterization of collections of North American Paraisaria specimens support the description of two new species and two new combinations for known species. P. cascadensis sp. nov. is a pathogen of Cyphoderris (Orthoptera) from the Pacific Northwest USA and P. pseudoheteropoda sp. nov. is...
Resource Type:: Article
Full Text:: two new species and two new combinations for known species. P. cascadensis sp. nov. is a pathogen of

The genome of the xerotolerant mold Wallemia sebi reveals adaptations to osmotic stress and suggests cryptic sexual reproduction

Creator:: Padamsee, Mahajabeen, Kumar, T. K. Arun, Riley, Robert, Binder, Manfred, Boyd, Alex, Calvo, Ana M., Furukawa, Kentaro, Hesse, Cedar, Hohmann, Stefan, James, Tim Y., LaButti, Kurt, Lapidus, Alla, Lindquist, Erika, Lucas, Susan, Miller, Kari, Shantappa, Sourabha, Grigoriev, Igor V., Hibbett, David S., McLaughlin, David J., Spatafora, Joseph W., and Aime, M. Catherine
Abstract:: Wallemia (Wallemiales, Wallemiomycetes) is a genus of xerophilic Fungi of uncertain phylogenetic position within Basidiomycota. Most commonly found as food contaminants, species of Wallemia have also been isolated from hypersaline environments. The ability to tolerate environments with reduced water activity is rare in Basidiomycota. We sequenced the genome of W....
Resource Type:: Article
Full Text:: Mahajabeen Padamsee a,2, T.K. Arun Kumar b, Robert Riley c, Manfred Binder d, Alex Boyd e, Ana M. Calvo f

Differential Expression of Genes Involved in Host Recognition, Attachment, and Degradation in the Mycoparasite Tolypocladium ophioglossoides

Creator:: Quandt, C. Alisha, Di, Yanming, Elser, Justin, Jaiswal, Pankaj, and Spatafora, Joseph W.
Abstract:: This is the publisher’s final pdf. The published article is copyrighted by the author(s) and published by the Genetics Society of America. The published article can be found at: https://doi.org/10.1534/g3.116.027045
Resource Type:: Article
Full Text:: , Oregon, 97331 ORCID ID: 0000-0003-0260-8995 (C.A.Q.) ABSTRACT The ability of a fungus to infect novel

SpataforaJosephBotanyPlantPathologyEntomopathogensAmazonian.pdf

Creator:: Sanjuan, Tatiana, Tabima, Javier, Restrepo, Silvia, Læssøe, Thomas, Spatafora, Joseph W., and Esperanza Franco-Molano, Ana
Abstract:: In the Amazon the only described species of Cordyceps sensu stricto (Hypocreales, Cordycipitaceae) that parasitize insects of Orthopterida (orders Orthoptera and Phasmida) are Cordyceps locustiphila and C. uleana. However, the type specimens for both taxa have been lost and the concepts of these species are uncertain. To achieve a more...
Full Text:: 1999). A re-alignment of SSU and LSU was performed with Muscle (Edgar 2004) with the default settings

ScholarsArchive@OSU

Metagenome sequence of Elaphomyces granulatus from sporocarp tissue reveals Ascomycota ectomycorrhizal fingerprints of genome expansion and a Proteobacteria-rich microbiome

Phylogenetic placement of the ectomycorrhizal genus Cenococcum in Gloniaceae (Dothideomycetes)

BoydAlexanderBotanyPlantPathologyGenomeSequencingProvides_SupportingInformation.pdf

BoydAlexanderBotanyPlantPathologyGenomeSequencingProvides.pdf

Comparative Genomics of a Plant-Pathogenic Fungus, Pyrenophora tritici-repentis, Reveals Transduplication and the Impact of Repeat Elements on Pathogenicity and Population Divergence

SpataforaJosephBotanyPlantPathologyPaleozoicOriginEnzymaticSupplementaryMaterials.pdf

New species and new combinations in the genus Paraisaria (Hypocreales, Ophiocordycipitaceae) from the U.S.A., supported by polyphasic analysis

The genome of the xerotolerant mold Wallemia sebi reveals adaptations to osmotic stress and suggests cryptic sexual reproduction

Differential Expression of Genes Involved in Host Recognition, Attachment, and Degradation in the Mycoparasite Tolypocladium ophioglossoides

SpataforaJosephBotanyPlantPathologyEntomopathogensAmazonian.pdf

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